Marco Panettieri

Postdoctoral Researcher

Equipe SEDS (Sédimentologie, Environnement et Dynamique Sédimentaire)

UMR 6282 Biogéosciences CNRS,

Université de Bourgogne, 6 bd Gabriel, F-21000 Dijon, France


marco.panettieri [at]

Birth date: 15 October1982


Research areas

The sttudy of soil organic matter dynamics related to land-use in agrosystems using stable isotope techniques, gas chromatography, high-resolution mass spectrometry, nuclear magnetic resonance, and biochemical parameters (enzymatic activities, PLFA).


Keywords: soil, soil chemistry, compond specific analyses, isotopic geochemistry, 15N, 13C, greenhouse gas,  carbon cycles, organic matter, DOC, WEOC, NMR, enzymatic activities.


Analytical techniques

Stable isotopic geochemistry: mass spectrometry δ15N, δ13C  isotopic analyses of gaseous and solid forms (organics), Solid State NMR, spectrophotometry.

Other techniques: gas chromatography, elemental analyses C and N, atmospheric CO2 measurements and dissolved organic carbon.


Working experience

2017 R&D Manager at UpCycle-La boite a champignons

2015-2017 Postdoctoral researcher (AgreenSkills fellowship) at UMR ECOSYS INRA Grignon

2014 Visiting researcher at Institut d'ecologie et des sciences de l'environnement de Paris

2012 Visiting researcher at Old Dominion University Norfolk (Virginia, USA)

2011 Visiting researcher at Forschungszentrum Juelich (Germany)

2009-2013 PhD candidate (+postdoc) Instituto de Recursos Naturales y Agrobiologia de Sevilla (IRNAS-CSIC, Spain) 


Miguel Iniesto

Postdoc Researcher

Equipe BioMEUMR CNRS 5561 Biogéosciences

Université de Bourgogne, DIJON

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International PhD Thesis in Ecology, Universidad Autónoma de Madrid. Cumlaude Honors. Supervisors: Ana Isabel López Archilla & MªCarmen Guerrero Sánchez.

Thesis subject: Microbial mats: The implication of these communities in early stages of fossilization (Tapetes microbianos. Un elemento clave en tafonomía)

Field: Microbial Ecology

2009-2011: Master Degree in Clinical Microbiology, Universidad Autónoma de Madrid.

2003-2006: BSc in Biological Sciences, Universidad Autónoma de Madrid.



Previous felloships

2013: Research stay (3 months) at IMPMC – UPMC, Paris.

PI: Karim Benzerara


2012: Research stay (3 months) at IMPMC – UPMC, Paris.

PI: Karim Benzerara



Research Projects

ANR-13-JS06-0001  Après la fin : la reconstruction des communautés marines durant la rediversification du Trias inférieur (projet AFTER)

PI : Arnaud Brayard (Biogeosciences, Université Bourgogne)

Funding: Agence Nationale de la Recherche (ANR)


PE|Cl l-0369-2758 Amenazas y oportunidades del Cambio Global para la Mancha Húmeda, biodiversidad, restauración y aplicaciones de las comunidades de biofilms

PI : Máximo Florín (UCLM) - Anabel López-Archilla (Dpto. Ecología - UAM)

Funding : Comunidad de Castilla-La Mancha (Spanish Regional Government)


CGL-2013-42643 Las Hoyas (Cretácico Inferior): comunidades microbianas, diversidad y dinámica paleoecológica en el contexto de un sistema regional de humedales

PI : Ángela D. Buscalioni (Dpto. Biología - UAM)

Funding : Ministerio de Economía y Competitividad (Spanish Government)


CGL-2009-11838   Ecosistemas continentales del cretácico inferior de la península ibérica: representatividad y procesos geobiológicos

PI: Ángela D. Buscalioni (Dpto. Biología - UAM)

Funding: Ministerio de Ciencia e Innovación (Spanish Government)




Iniesto, M., Villalba, I., Guerrero, M. C., Buscalioni, Á. D., & López-Archilla, A. I. (under review) The effect of microbial mats in the decay of anuran: Trying to understand the fossil record. Scientific reports

Iniesto, M., Buscalioni, Á. D., Guerrero, M. C., Benzerara, K., Moreira, D. & López-Archilla, A. I. (2016) Exceptional preservation of vertebrates and invertebrates mediated by the formation of a sarcophagus and the body impression in microbial mats. Scientific Report, 6, 25716. doi:10.1038/srep25716

Guerrero, M. C., López-Archilla, A. I., & Iniesto, M. (2016). III.4.- Microbial mats and preservation. In F. J. Poyato-Ariza & Á. D. Buscalioni (Eds.), Las Hoyas: A Cretaceous wetland: A multidisciplinary synthesis after 25 years of research on an exceptional fossil Lagerstätte from Spain. München: Verlag Dr. Friedrich Pfeil.

Iniesto, M., Laguna, C., Florín, M., Guerrero, M. C., Chicote, A.,  Buscalioni, Á. D. & López-Archilla, A. I. (2015) The Impact of Microbial Mats and their Microenvironmental Conditions in Early Decay Of Fish. Palaios, 30, 792-801. doi: 10.2110/palo.2014.086

Iniesto, M., Zeyen, N., López-Archilla, A. I., Bernard, S., Buscalioni, Á. D., Guerrero, M. C. & Benzerara, K. (2015) Preservation in microbial mats: mineralization by a talc-like mineral phase of a fish embedded in a microbial sarcophagus. Frontiers in Earth Science, 3, 1-13. doi: 10.3389/feart.2015.00051

Iniesto, M., López-Archilla, A. I., Fregenal-Martínez, M. A., Buscalioni, Á. D., & Guerrero, M. C. (2013). Involvement of microbial mats in delayed decay: An experimental essay on fish preservation. Palaios, 28(1), 56–66. doi:10.2110/palo.2011.p11-099r


Maître de conférence (Assistant Professor)

Equipe SEDS (Sédimentologie, Environnement et Dynamique Sédimentaire)

UMR 6282 Biogéosciences CNRS,

Université de Bourgogne, 6 bd Gabriel, F-21000 Dijon, France

Tel. +33 (0)3 80 39 90 14

Fax. +33 (0)3 80 39 63 87

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Birth date: 01 february 1979


Research areas

My research activities focus on the study of organic matter dynamics in the environment: transfers from plant to soil/sediments/solution and evolution in a changing environment (natural and anthropogenic changes). This research is based on the characterisation of the organic matter pools and of the transformation processes using specific molecular and isotopic markers.

For this research, I use stable isotope techniques (13C labelling technique) and biomarkers of the organic matter origin and degradation (phenols, lipids, sugars…)

Keywords: soil, water, isotopic geochemistry, 13C, carbon cycle, organic matter, DOC, WEOC.


Analytical techniques

Organic matter biomarkers extraction and purification from various matrices (soil, sediments, plants). Stable isotopic geochemistry (δ13C), isotopic analyses of organic molecules and bulk (GC-C-IRMS, EA-IRMS), gas chromatography, elemental analyses C and N, spectrophotometry.


Teaching experience

Université de Bourgogne, Dijon (France), in the Earth and Environmental Sciences Department (ETEC), around 230 hours/year from the 1st to the 5th year.

Supervisor of postgraduate labwork.


Recent publications

Thevenot M., Dousset S. (2015). Compost effect on diuron retention and transport in structured vineyard soils. Pedosphere 25, 25-36.

Thevenot M., Dignac M.-F., Mendez-Millan M., Lapierre C., Bahri H., Hattée C., Pollet B., Bardoux G., Rumpel C. (2013). Characterization and dynamics of a lignin-fraction isolated from an agricultural soil. Soil Biology and Fertility 49, 517-526.

Thevenot M., Dignac M.-F., Rumpel C. (2010). Lignins fate in soils: a review. Soil Biology & Biochemistry 42, 1200-1211.

Dousset S., Thevenot M., Schrack D., Gouy V., Carluer N. (2010). Effect of grass cover on water and pesticide transport through undisturbed soil columns, comparison with field study (Morcille watershed, Beaujolais). Environmental Pollution 158, 2446-2453.

Thevenot M., Dousset S., Hertkorn N., Schmitt-Kopplin P., Andreux F. (2009). Interactions of diuron with dissolved organic matter from organic amendments. Science of the Total Environment 407, 4297-4302.

Frank Cézilly

frank-cezilly1 vProfesseur à l'Université de Bourgogne

Equipe Ecologie Evolutive

Laboratoire Biogeosciences

CNRS, UMR 5561

Universite de Bourgogne

6, Blvd Gabriel,

21000 Dijon, France

tel (33) 3 80 39 90 29 /Fax 62 31

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de male en pere v 


Available in bookstores on February 20



De mâle en père

Frank Cézilly

14 x 20,5 cm, 272 p.

19 €

Eds Buchet-Castel, 2014

ISBN 978-2-283-02598-7


Conférence à l'Espace des Sciences à Rennes le 25/02/2014, podcast disponible sur youtube.




Research interests

My main research interests are in the study of host-parasite interactions, sexual selection and mating systems, and bird population biology.


1)    Host-parasite interactions

This part of my research is divided in two themes:

- Analysing the proximate causes and adaptive consequences of the influence of parasites with complex life cycles on the behaviour and physiology of their hosts: I am particularly combining ecological and physiological approaches to provide a critical assessment of the 'host-manipulation' hypothesis.

zenaida mesure v- Assessing the causes and consequences of variation in the prevalence and intensity of infection with blood parasites in two tropical bird species, the Zenaida dove, Zenaida aurita, and the Lesser Antillean Bullfinch, Loxigilla noctis.


2) Sexual selection and mating systems

At the moment, I am concerned with two main research questions:

- Analyzing the patterns of mating and re-mating in a tropical and monogamous bird species, the Zenaida dove, in relation with phenotypic and genetic individual quality.

- Understanding the evolution of sexual dichromatism within the genus Loxigilla.


3) Bird population biology

This part of my research is about the relative influence of genetic and phenotypic individual quality on life-history traits such as adult survival, recruitment, and breeding success in both the Zenaida dove and the Greater Flamingo, Phoenicopterus roseus (in cooperation with the Tour du Valat research center).



You can download here the exhaustive list.


last update: february 2014

Gabriele Sorci

Directeur de Recherche CNRS


Address: BioGéoSciences, CNRS UMR 5561, Université de Bourgogne, 6 Boulevard Gabriel, 21000 Dijon, France

Phone: +33 (0) 380399028

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Research interests  

My research activity covers many aspects of evolutionary biology. Currently, my projects focus on

  • the evolution of life history traits with special emphasis on the evolution of aging
  • the evolutionary ecology of avian malaria (using both lab experiments and epidemiological surveys)
  • the evolution of immune regulation (using both birds and mammals as model species)  

Selected publications (2000 – 2010)

Loiseau, C., Zoorob, R., Robert, A., Chastel, O., Julliard, R., Sorci, G. (in press) Plasmodium relictum infection and MHC diversity in the house sparrow (Passer domesticus). Proceedings of the Royal Society B.

Belloni, V., Faivre, B., Guerreiro, R., Arnoux, E, Bellenger, J., Sorci, G. 2010. Suppressing an anti-inflammatory cytokine reveals a strong age-dependent survival cost in mice. PLoS ONE 5: e12940.

Cellier-Holzem, E., Esparza-Salas, R., Garnier, S., Sorci, G. 2010. Effect of repeated exposure to Plasmodium relictum (lineage SGS1) on infection dynamics in domestic canaries. International Journal for Parasitology 40: 1447-1453.

Kim, S.Y., Velando, A., Sorci, G., Alonso-Alvarez, C. 2010. Genetic correlation between resistance to oxidative stress and reproductive life span in a bird species. Evolution 64: 852-857.

Lecomte, V.J., Sorci, G., Cornet, S., Jaeger, A., Faivre, B., Arnoux, E., Gaillard, M., Trouve, C., Besson, D., Chastel, O., Weimerskirch, H. 2010. Patterns of aging in the long-lived wandering albatross. Proceedings of the National Academy of Sciences, USA 107: 6370-6375.

Cornet, S., Sorci, G. 2010. Parasite virulence when the infection reduces the host immune response. Proceedings of the Royal Society B 277: 1929-1935.

Chargé, R., Saint Jalme, M., Lacroix, F., Cadet, A., Sorci, G. 2010. Male health status signalled by courtship display, reveals ejaculate quality and hatching success in a lekking species. Journal of Animal Ecology 79: 843-850.

Cornet, S., Franceschi, N., Bollache, L., Rigaud, T., Sorci, G. 2009. Variation and covariation in infectivity, virulence and immunodepression in the host-parasite association Gammarus pulex - Pomhorhynchus laevis. Proceedings of the Royal Society B 276: 4229-4236.

Sorci, G., Faivre, B. 2009. Inflammation and oxidative stress in vertebrate host-parasite systems. Philosophical Transactions of the Royal Society B 364: 71-83.

Loiseau, C., Richard, M., Garnier, S., Chastel, O., Julliard, R., Zoorob, R., Sorci, G. 2009. Diversifying selection on MHC class I in the house sparrow (Passer domesticus). Molecular Ecology 18: 1331-1340.

Loiseau, C., Zoorob, R., Garnier, S., Birard, J., Federici, P., Julliard, R., Sorci, G. 2008. Antagonistic effects of a Mhc Class I allele on malaria infected house sparrows. Ecology Letters 11: 258-265.

Loiseau, C.,  Fellous, S., Haussy, C., Chastel, O., Sorci, G. 2008. Condition dependent effects of corticosterone on a carotenoid-based begging signal in house sparrows. Hormones and Behavior 53: 266-273.

Alonso-Alvarez, C., Bertrand, S., Faivre, B., Sorci, G. 2007. Increased susceptibility to oxidative damage as a cost of accelerated somatic growth in zebra finches. Functional Ecology 21: 873-879.

Alonso-Alvarez, C., Bertrand, S., Sorci, G. 2007. Energetic reserves, leptin and testosterone: a refinement of the immunocompetence handicap hypothesis. Biology Letters 3: 271-274.

Loyau, A., Saint Jalme, M., Mauget, R., Sorci, G. 2007. Male sexual attractiveness affects the investment of maternal resources into the eggs in peafowl (Pavo cristatus). Behavioral Ecology and Sociobiology 61: 1043-1052.

Alonso-Alvarez, C., Bertrand, S., Faivre, B., Chastel, O., Sorci, G. 2007. Testosterone and oxidative stress: the oxidation handicap hypothesis. Proceedings of the Royal Society B 274: 819-825.

Bertrand, S., Criscuolo, F., Faivre, B., Sorci, G. 2006. Immune activation increases susceptibility to oxidative tissue damage in Zebra Finches. Functional Ecology 20: 1022-1027.

Bertrand, S., Faivre, B., Sorci, G. 2006. Do carotenoid-based sexual traits signal the availability of non-pigmentary antioxidants? Journal of Experimental Biology 209: 4414-4419.

Alonso-Alvarez, C., Bertrand, S., Devevey, G., Prost, J., Faivre, B., Chastel, O., Sorci, G. 2006. An experimental manipulation of life-history trajectories and resistance to oxidative stress. Evolution 60: 1913-1924.

Bertrand, S., Alonso-Alvarez, C., Devevey, G., Faivre, B., Prost, J., Sorci, G. 2006. Carotenoids modulate the trade-off between egg production and resistance to oxidative stress in zebra finches. Oecologia 147: 576-584.

Bonneaud, C., Pérez-Tris, J., Federici P., Chastel, O., Sorci, G. 2006. Major histocompatibility alleles associated with local resistance to malaria in a passerine. Evolution 58: 2823-2830.

Bonneaud, C., Chastel, O., Federici P., Westerdahl, H., Sorci, G. 2006. Complex MHC-based mate choice in a wild-passerine. Proceedings of the Royal Society B 273: 1111-1116.

Criscuolo F., Gonzalez-Barroso M., Bouillaud F., Ricquier D., Miroux B., Sorci, G. 2005. Mitochondrial uncoupling proteins: new perspectives for evolutionary ecologists. American Naturalist 166: 686-699.

Bonneaud, C., Richard, M., Faivre, B., Westerdahl, H., Sorci, G. 2005. An MHC class I allele associated to the expression of T-dependent immune response in the house sparrow. Immunogenetics 57: 782-789.

Loyau A., Saint Jalme, M., Cagniant C., Sorci, G. 2005. Multiple sexual advertisements honestly reflect health status in peacocks (Pavo cristatus). Behavioral Ecology and Sociobiology 58: 552-557.

Bonneaud, C., Mazuc, J., Chastel, O., Westerdahl, H., Sorci, G. 2004. Terminal investment induced by immune challenge and Mhc associated fitness traits in the house sparrow. Evolution 58: 2823-2830.

Alonso-Alvarez, C., Bertrand, S., Devedey, G., Gaillard, M., Prost, J., Faivre, B., Sorci, G. 2004. An experimental test of the dose-dependent effect of carotenoids and immune activation on sexual signals and antioxidant activity. American Naturalist 164: 651-659.

Alonso-Alvarez, C., Bertrand, S., Devedey, G., Prost, J., Faivre, B., Sorci, G. 2004. Oxidative stress as a proximate cost of reproduction . Ecology Letters 7: 363-368.

Bonneaud C., Sorci G., Morin, V., Westerdahl, H., Zoorob, R., Wittzell, H. 2004. Diversity of MHC class I and II genes in house sparrows (Passer domesticus). Immunogenetics 55: 855-865.

Alonso-Alvarez, C., Doutrelant, C. Sorci, G. 2004. Ultraviolet reflectance affects male-male interactions in the blue tit (Parus caeruleus ultramarinus). Behavioral Ecology 15: 805-809.

Mazuc, J., Bonneaud, C., Chastel, O., Sorci, G. 2003. Social environment affects female and egg testosterone levels in the house sparrows (Passer domesticus). Ecology Letters 6: 1084-1090.

Sorci, G., Skarstein, F., Morand, S., Hugot, J.P. 2003. Correlated evolution between host immunity and parasite life histories in primates and oxyurid parasites. Proceedings of the Royal Society B 270: 2481-2484.

Faivre, B., Grégoire, A., Préault, M., Cézilly, F., Sorci, G. 2003. Immune activation rapidly mirrored in a secondary sexual trait. Science 300: 103.

Doherty, P.F.Jr, Sorci, G., Royle, J.A., Hines, J.E., Nichols, J.D., Boulinier, T. 2003. Sexual selection affects local extinction and turnover in bird communities. Proceedings of the National Academy of Sciences, USA 100: 5852-5857.

Soler, J.J., de Neve, L., Perez-Contreras, T., Soler, M., Sorci, G. 2003. Trade-off between immunocompetence and growth in magpies: an experimental study. Proceedings of the Royal Society B 270: 241-248.

Bonneaud, C., Mazuc, J., Gonzalez, G., Haussy, C., Chastel, O., Faivre, B., Sorci, G. 2003. Assessing the cost of mounting an immune response. American Naturalist 161: 367-379.

Mazuc, J., Chastel, O., Sorci, G. 2003. No evidence for differential maternal allocation to offspring in the house sparrow (Passer domesticus). Behavioral Ecology 14: 340-346.

Gonzalez, G., Sorci G., Smith, L.C., de Lope, F. 2001. Testosterone and sexual signalling in male house sparrows (Passer domesticus). Behavioral Ecology and Sociobiology 50: 557-562.

Olivier Gilg

Chercheur libre à l'Université de Bourgogne

Président du Groupe de Recherche en Ecologie Arctique depuis 1999




Post-Doc / Associate Researcher at University of Helsinki since 2002


(with Prof. Ilkka Hanski at Metapopulation Research Group)





Main recent papers

  • Gilg O, Yoccoz NG (2010) Explaining bird migration. Science 327:276-277

  • Gilg O, Hanski I, Sittler B (2003) Cyclic dynamics in a simple vertebrate predator-prey community. Science 302:866-868

  • Gilg O, Sittler B, Hanski I (2009) Climate change and cyclic predator-prey population dynamics in the high-Arctic. Global Change Biol 15:2634–2652

  • Post E et al (2009) Ecological Dynamics Across the Arctic Associated with Recent Climate Change. Science 325:1355-1358

  • Gilg O, Sittler B, Sabard B, Hurstel A, Sané R, Delattre P, Hanski I (2006) Functional and numerical responses of four lemming predators in high arctic Greenland. Oikos 113:196-213

Click here for Complete list and DOI numbers

(please ask olivier.gilg[at] for PDF if you you don't have access rights to some journals)





My primary education is in landscape planning (I became a Landscape Architect from ETS Lullier-CH in 1991) but my main passion has always been on "wild things", hence I have been working for conservation agencies in France since 1993. In the same time, I continued to study the ecology of extreme environments in Aix-Marseille III university where I got my master degree (DEA "ECAMM") in 1996, developing some mathematical tools to assess the degree of naturalness of some mountain forests. But since my first expedition to Greenland in 1990, part of my life has turned towards the Arctic regions where I returned ever since every summer for several months (Svalbard , Siberia , Arctic Canada, Alaska and mainly NE Greenland). That's where and when my PhD project started, even though I was only officially registered as a PhD student in 1998. All field works are organized with the NGO "GREA" (Arctic Ecology Research Group / Groupe de Recherche en Ecologie Arctique).







Beside the research I'm in charge for the French Nature Reserve Network / Reserves Naturelles de France (conservation and management issues), my main work (for my PhD) investigated the lemming cycle and predator-prey interactions in Greenland. Several recent studies have converged to the conclusion that the periodic rodent oscillations in boreal and arctic regions are essentially maintained by the interactions between the rodents and their mustelid predators. However, before arriving at a definite conclusion for this 100-yr-old puzzle of rodent dynamics, several hypotheses still need to be tested, combining appropriate empirical and theoretical approaches. For this purpose, I adapted the empirically-based models developed by Hanski and co-workers for a simple and well-documented high arctic vertebrate community from northeast Greenland. An ongoing collaborative effort with the universities of Helsinki and Freiburg was initiated in 1998 in order to collect information needed to parameterize the model.


Having documented the numerical and functional responses of the main lemming predators (stoat, Arctic fox, snowy owl and long-tailed skua), we are now able to estimate the summer predation rate for the entire predator guild, according to the lemming density at snowmelt (N' ) and to the current lemming density (N). This predation rate is delayed, in line with the specialist predator hypothesis. These functional and numerical responses were used to parameterize a predator-prey model that predicts a cyclic dynamic of similar amplitudes and cycle lengths as observed in the field (see Figs).


Empirical (upper panel) and model predicted (lower panel) time series
for the lemming (squares) and the stoat (circles). Science (2003) 302:866-868.



I then investigated the behaviour and sensitivity of this model, especially the climate change related impact on the dynamics (see Science and GCB papers from 2009). The impact of the snowy owl and long-tailed skua predation (preferences for females or specific age classes) on the lemming dynamics will also be tested with this model in the near future.


New Ivory Gull studies in North Greenland...

Beside this long-term research on predator prey dynamics, that will continue on a new study site in NE Greenland (Hochstetter Forland) in 2010-2013, I also initiated a program on ivory gull in 2003, with satellite tracking going on since 2007. This high-Arctic species, currently endangered by the reduction of sea-ice, it's main and almost exclusive habitat, is likely to undergo dramatic changes in the next few years or at most decades. Whether it will completely disappear or adapt to its new environment, this makes it a very interesting species to study.


Dernière mise à jour : 16/01/2010

Emmanuelle Vennin

Bourgogne University

UFR Sciences Vie, terre et Environnement – Dept ETEC

UMR 5561 Biogéosciences

6, Bd Gabriel, 21000 Dijon – France

Tél : +33 380-39-63-62 Fax : +33 380-39-63-87

Email : Cette adresse e-mail est protégée contre les robots spammeurs. Vous devez activer le JavaScript pour la visualiser. 





- PHD, Lille-Pau, 1996

- HDR, Lille, 2005 Post-doctoral Researcher, ELF Production-Exploration

- Associate Professor, “Museum National Histoire Naturelle”, Laboratory UMR 5143, - CNRS, Paris (1998-2005)

- Professor, University of “Bourgogne”, Laboratory Biogeosciences, UMR, Dijon (since September 2005)


Professional Affiliations


Responsable Master 2 : Géobiosphère (2006-2010)


Joined direction of UFR Sciences de la Terre (directeur JF Deconinck, 2007-2009)

Membre of UMR Biogeosciences council (since 2007)

Membre of the recruitment commission (since 2008)

Membre de International Association of Sedimentologists (IAS)

National Correspondent of the IAS for France : since 2015

Responsable Team SEDS in the Biogeosciences Laboratory

Vice president of Jury of the secondary education evalution and selection 

Jury member of the secondary education evalution and selection 




Topics: carbonate petrology, sedimentology; paleoecology; basin sedimentation, bioconstruction, microbialites, microbial mats

Main currents thematic:

{mosimage}-  Impact of the carbonate deposits on climatic changes: example of the northern margin of Gondwana during the Late Ordovician previous to the onset of the Hirnantian glaciation.

-{mosimage} Ecological changes and characterization of the carbonate factory evolution through the Permo-Trias transition recorded in Iranian carbonate platforms and fracturation in Permian reef-mounds (Russia).

- Analysis of climatic changes and paleotemperature estimation during the Lower Cretaceous; relationships between calcifying organisms and climate during the Early Cretaceous: example on carbonate platform during the Valanginian and Aptian.

- Ecologic, geometric and sedimentologic changes in mixed evaporite-cabonate and siliciclastic platforms on the Neogene’s basin of south Spain.

More recently new topics are developed :

Microbially-induced mineralization is considered as one of the main natural processes controlling CO2 levels in the atmosphere and a major structural and ecological player in the modern and in the past ecosystems. The result of this process is the formation of « biological » microbial deposits. Microbialites (organo-sedimentary structure predominantly accreted by sediment trapping, binding, and/or in situ precipitation as a result of the growth and metabolic activity of microorganisms) are found throughout the geological record and are biosignatures of the early Earth and in the search for extraterrestrial life. The oldest preserved fossil stromatolites in the geological record are about 3.4 billion years old and have been found in Western Australia and Canada. In modern natural systems, biological carbonates precipitation occurs in different forms, fabrics and in different environments (saline lagons, hypersaline, alkaline lakes, freshwater rivers and lakes). The study of mechanisms of microbialite formation at different scales (km until nm) is critical for interpretation and understanding their origin and evaluation. This multi-scale approach concerns: (1) macro-scale  (tectonics, climate); (2) meso-scale (hydrothermal circulation, water chemistry); (2) micro-scale (microbial - mineral interaction, mineralogy/morphology of carbonates). Two fieldworks are chosen: modern (Great Salt Lake, USA and Cuba) and ancient (Precambrian of Gabon in Africa, Trias of Utah in USA and Oligo-MiocenebasinofLimagnes, France) microbialites. The results can help to answer important questions about i) carbonate formations in past (geological context) and present time (biogeochemical cycle and context of CO2 storage); ii) Preservation in the fossil record of mineralization processes.


            A first detailed analysis helped to better constrain the mechanisms of formation of the microbial deposits. Microbialite is the result of mineralization and lithification of a microbial mat under the influence of a metabolic component (intrinsic) related to the activity of the microbial mat first, and environmental (extrinsic) conditions. Although the component related to the metabolic activity of microbial mat is a prerequisite for mineralization, this work focused on the environmental component and the associated controlling factors. Furthermore, the influence of extrinsic factors is often limited in the literature to changes in microbial communities. The aim of this manuscript is to replace microbial deposits in their context of formation. It allows to understand the direct implications of the extrinsic parameters on (1) the processes of mineralization of the microbial mats and formation of microbialites, (2) the morphologies of microbial structures, (3) the distribution and (4) the relationship between microbial mats and microbialite and their environment. While the mineralization potential is generally associated with the intrinsic activity of the microbial mat, the lateral and temporal variations of this potential within a same microbial mat were used to illustrate the influence of extrinsic parameters on mineralization, and therefore on the formation of microbialites. However, a significant mineralization potential does not necessarily mean microbialite formation. The preservation of the mineralization product is necessary for lithifying a microbial mat. The process of lithification is a major driver for the preservation of these microbial structures in the fossil record. Moreover, indirect evidences of microbial activity may also be retained by a geochemical signal.

PHD students:

Thèses et %

Année de soutenance

Principaux résultats


R. Bourrillot (E. Vennin 100%)


6 colloques et 3 publications

Maître de conférence (ENSEGID)

A. Bonin (E. Vennin 50% et E. Pucéat 50%)

2011 Thèse FABER

5 colloques et 3 publications (21, 3 et Vennin et al. 2007)

ATER Rennes et Ingénieur Badley-Ashton, Angleterre

M. Deville de Périère (E. Vennin 50% et C . Durlet 50%)

2011 Thèse industrielle

12 colloques et 1 publications

Ingénieur Badley-Ashton, Angleterre

C. Kolodka (E. Vennin 100%)

2013 Thèse CIFRE

6 colloques et 2 publications (2, 14)

Post-Doc 18 mois- (CEREGE-TOTAL) depuis Oct 2015

A. Asghari (E. Vennin 100%)

2014 Thèse industrielle

3 colloques et 1 publication (17)

Ingénieur National Iranian Petroleum Company

A. Ndongo (M. Guiraud 50% et E. Vennin 50%)

2015 Thèse Industrielle

3 colloques et 1 publication (22)

Enseignant-chercheur Franceville, Gabon-Juin 2016

A. Bouton (E. Vennin  50%, A. Brayard 25%, C. Thomazo 25%)

2016 Thèse ED à venir

11 colloques et 1 publication (20) et deux publications soumises

- soutenance 13 Mai 2016

A. Pace (R. Bourillot 50%, P. Razin 25%, E. Vennin 25%)

2016 Thèse ED à venir

13 colloques

- soutenance Juillet 2016

P. Perron (M. Guiraud; E. Vennin 25%)

2018 Thèse CIFRE ENGIE






Industrial funding:

2010-2014 Contrat Industriel AREVA. The Palaeoproterozoic uranium ore deposits of Bangombé and Mikouloungou (Gabon) and their environment in a new sedimentological and tectonical setting. Coord. Michel Guiraud et E. Vennin (Dijon). Contrat Université de Bourgogne/CNRS/AREVA (200keuros).

2011-2014: Contrat de recherche et PHD de Afshin Asghari : Sequence stratigraphy, paleoenvironment and paleogeography of pre-Khuff series in Southern Iran (Zagros and Persian Gulf); Projet de recherche Université de Bourgogne/GDF_SUEZ (E. Vennin 365897 euros).

2010-2013 : PHD de C. Kolodka : relation de rétroaction entre la déformation des évaporites et le développement de plates-formes carbonatées. Projet de recherche Université de Bourgogne/GDF_SUEZ (E. Vennin 156k euros).

2013-2015 : Contrat de recherche ; Rôle(s) des microbialités dans le registre sédimentaire continental-marin : comparaison d'exemples actuels et anciens ». Projet de recherche Université de Bourgogne/GDF_SUEZ. Financement Bourse ED –Bourgogne, Contrat GDF-Suez : (E. Vennin 90keuros)

Avenant 2016-3mois: Contrat de recherche; Rôle(s) des microbialités dans le registre sédimentaire continental-marin : comparaison d'exemples actuels et anciens ». Projet de recherche Université de Bourgogne/GDF_SUEZ. Financement Bourse ED –Bourgogne, Contrat GDF-Suez : (E. Vennin 11keuros)

2013 : Contrat Total Angola (2013) : Les Evaporites, 1 Rapport (100 pages), (E. Vennin 10k euros)

2015 : Contrat de prestation : Relation sédimentation et circulation hydrothermale en lien avec des failles à partir de l’exemple des dépôts lacustres à stromatolites des Limagnes (Oligo-Miocène, Massif Central, France)- Contrat de prestation TOTAL-EP Université de Bourgogne (E. Vennin 9.5keuros).

Academic funding:

2011-2013 : « Impact de la production carbonatée sur les variations climatiques à l'approche de période de crises de la biodiversité des organismes calcifiants », 24mois de Post-Doctorat PARI II Post-°©Doc2012-°©9201AA0049S04869 (E. Vennin, 48k euros).

2014-16 : LABEX UnivEarthS - La vie sur la planète terre : depuis le commencement jusqu'à la dynamique actuelle (Porteur Pascal Philippot – C. Thomazo et E. Vennin (WP members) 10k Euros).

2015-2016 : INTERRVIE Etude intégrée des processus à l’origine de changements environnementaux au cours du Trias inférieur et impact sur la sédimentation et les communautés benthiques (E. Vennin 5000 euros)




Licence 1

Lecture on Sedimentary petrology

Lecture on Geodynamical aspects of the Earth 

Licence 2

Lecture on History of the Earth and cartography

Licence 3

Lecture on sedimentary and biosedimentary environments

CartographyIn the field: Geotraverse (1 week) and “Georessources”


Master I (Earth Sciences and Biology)

Micropaleontology- Petroleum deposits and reservoirs

Short lecture on diagenesis (Evaporites)

Cartography and field trips


Master II

Conference on basin deposits in carbonate platforms

In the field: South Spain or France (10 days)


PUBLICATIONS (2012-2016)

1. Reynaud, J.-Y., Vennin, E., Parize, O., Rubino, J.-L., and Bourdillon, C., 2012, Incised valleys and tidal seaways; the example of the Miocene Uzes-Castillon Basin, SE France: Bulletin de la Société Géologique de France, v. 183, no. 5, p. 471-486.

2. Kolodka C., Vennin E., Vachard D., Trocmé V. & Goodarzi M.H. 2012. Timing and progression of the end-Guadalupian crisis in the Fars province (Dalan Formation, Kuh-e Gakhum, Iran) constrained by foraminifers and other carbonate microfossils. Facies, 58, (1) : 131-153. [IF=1.338]

3. Bonin, A., Vennin, E., Puceat, E., Guiraud, M., Arnaud-Vanneau, A., Adatte, T., Pittet, B., and Mattioli, E., 2012, Community replacement of neritic carbonate organisms during the late Valanginian platform demise; a new record from the Provence Platform: Palaeogeography, Palaeoclimatology, Palaeoecology, v. 365-366, p. 57-80.

4. Barbarin, N., Bonin, A., Mattioli, E., Puceat, E., Cappetta, H., Greselle, B., Pittet, B., Vennin, E., and Joachimski, M., 2012, Evidence for a complex Valanginian nannoconid decline in the Vocontian Basin (south east France): Marine Micropaleontology, v. 84-85, p. 37-53.

5. Clerc, S., Buoncristiani, J.-F., Guiraud, M., Vennin, E., Desaubliaux, G., and Portier, E., 2013, Subglacial to proglacial depositional environments in an Ordovician glacial tunnel valley, Alnif, Morocco: Palaeogeography, Palaeoclimatology, Palaeoecology, v. 370, p. 127-144.

6. Brayard, A., Bylund, K. G., Jenks, J. F., Stephen, D. A., Olivier, N., Escarguel, G., Fara, E., and Vennin, E., 2013, Smithian ammonoid faunas from Utah: implications for Early Triassic biostratigraphy, correlation and basinal paleogeography: Swiss Journal of Paleontology, v. 132, no. 2, p. 141.

7. Hofmann, R., Hautmann, M., Brayard, A., Nuetzel, A., Bylund, K. G., Jenks, J. F., Vennin, E., Olivier, N., and Bucher, H., 2014, Recovery of benthic marine communities from the end-Permian mass extinction at the low latitudes of eastern Panthalassa: Palaeontology, v. 57, no. 3, p. 547-589.

8. Olivier, N., Brayard, A., Fara, E., Bylund, K. G., Jenks, J. F., Vennin, E., Stephen, D. A., and Escarguel, G., 2014, Smithian shoreline migrations and depositional settings in Timpoweap Canyon (Early Triassic, Utah, USA): Geological Magazine, v. 151, no. 5, p. 938-955.

9. Pohl, A., Donnadieu, Y., Le Hir, G., Buoncristiani, J. F., and Vennin, E., 2014, Effect of the Ordovician paleogeography on the (in)stability of the climate: Climate of the Past, v. 10, no. 6, p. 2053-2066.

10. Jimenez-Sanchez, A., Vennin, E., and Villas, E., 2015, Trepostomate bryozoans from the upper Katian (Upper Ordovician) of Morocco; gigantism in high latitude Gondwana platforms: Journal of Paleontology, v. 89, no. 2, p. 195-221.

11. Jimenez-Sanchez, A., Villas, E., and Vennin, E., 2015, New trepostomate bryozoans from the Upper Ordovician of Morocco and the temperature influence on zooid size: Journal of Paleontology, v. 89, no. 3, p. 385-404.

12. Olivier, N., Brayard, A., Vennin, E., Escarguel, G., Fara, E., Bylund, K. G., Jenks, J. F., Caravaca, G., and Stephen, D. A., 2015, Evolution of depositional settings in the Torrey area during the Smithian (Early Triassic, Utah, USA) and their significance for the biotic recovery: Geological Journal.

13. Ravier, E., Guiraud, M., Guillien, A., Vennin, E., Buoncristiani, J.-F., and Portier, E., 2015, Research paper: Micro- to macro-scale internal structures, diagenesis and petrophysical evolution of injectite networks in the Vocontian Basin (France): Implications for fluid flow: Marine and Petroleum Geology, v. 64, p. 125-151.

14. Kolodka, C., Vennin, E., Bourillot, R., Granjeon, D., and Desaubliaux, G., 2015, Stratigraphic modelling of platform architecture and carbonate production: a Messinian case study (Sorbas Basin, SE Spain): Basin Research.

15. Brayard, A., Meier, M., Escarguel, G., Fara, E., Nuetzel, A., Olivier, N., Bylund, K. G., Jenks, J. F., Stephen, D. A., Hautmann, M., Vennin, E., and Bucher, H., 2015, Early Triassic 'Gulliver' gastropods; spatio-temporal distribution and significance for biotic recovery after the end-Permian mass extinction: Earth-Science Reviews, v. 146, p. 31-64.

16. Vennin, E., Olivier, N., Brayard, A., Bour, I., Thomazo, C., Escarguel, G., Fara, E., Bylund, K. G., Jenks, J. F., Stephen, D. A., Hofmann, R., and Pufahl, P., 2015, Microbial deposits in the aftermath of the end-Permian mass extinction; a diverging case from the Mineral Mountains (Utah, USA): Sedimentology, v. 62, no. 3, p. 753-792.

17. Vennin, E., Kolodka, C., Asghari, A., Thomazo, C., Buoncristiani, J. F., Goodarzi, H., and Desaubliaux, G., 2015, Research paper: Discussion on Palaeozoic discontinuities in the Kuh-e Surmeh area (Zagros, Iran): Marine and Petroleum Geology, v. 66, no. Part 4, p. 1073-1092.

18. Thomazo, C., Vennin, E., Brayard, A., Bour, I., Mathieu, O., Elmeknassi, S., Olivier, N., Escarguel, G., Bylund, K., and Jenks, J., 2016, A diagenetic control on the Early Triassic Smithian–Spathian carbon isotopic excursions recorded in the marine settings of the Thaynes Group (Utah, USA): Geobiology.

19. Carlut, J., Isambert, A., Bouquerel, H., Pecoits, E., Philippot, P., Vennin, E., Ader, M., Thomazo, C., Buoncristiani, J.-F., and Baton, F., 2015, Low temperature magnetic properties of the Late Archean Boolgeeda iron formation (Hamersley Group, Western Australia): environmental implications: Frontiers in Earth Science, v. 3, p. 18.

20. Bouton, A., Vennin, E., Pace, A., Bourillot, R., Dupraz, C., Thomazo, C., Brayard, A., Désaubliaux, G., and Visscher, P. T., 2015, External controls on the distribution, fabrics and mineralization of modern microbial mats in a coastal hypersaline lagoon, Cayo Coco (Cuba): Sedimentology.

21. Bonin, A., Pucéat, E., Vennin, E., Mattioli, E., Aurell, M., Joachimski, M., Barbarin, N., and Laffont, R., 2016, Cool episode and platform demise in the Early Aptian: New insights on the links between climate and carbonate production: Paleoceanography, v. 31, no. 1, p. 66.

22. Ndongo, A., Guiraud, M., Vennin, E., Mbina Mounguegui, M., Buoncristiani, J.F., Thomazo, C., Flotté, N., Accepted, Surficial fluid-pressure deformation structures in the Paleoproterozoic extensional Franceville Basin (SE Gabon): Precambriam Research



Philippe Amiotte Suchet, PhD

Assistant Professor in Earth and Environmental Sciences

University of Burgundy
Biogéosciences UMR CNRS 5561
6 bd Gabriel, 21000 DIJON, France
phone: 00 33 3 80 39 39 71
fax: 00 33 3 80 39 63 87
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  • Habilitation (HDR), University of Burgundy, France, 2009 - Production et transfert de carbone dans les hydrosystèmes : approches spatio-temporelles multi-échelles.
  •  PhD, Louis Pasteur University (ULP) of Strasbourg, France, 1994 - Carbon cycle, chemical erosion of continents and inputs to oceans.
  • Post-Graduate qualification in Earth Surface Geochemistry, ULP Strasbourg, France, 1989


Main Research Focus

  • River inputs of carbon to oceans, global biogeochemical cycles and weathering processes – present day and geologic times.

  • Origin and production of carbon in the soil-water system of the temperate forest using the isotope composition of dissolved inorganic and organic carbon.

  • Dynamic of dissolved solids fluxes (especially nutriments) mainly in streams of temperate ecosystems, factors and processes, relationships with the soil dynamic and the land cover.

  • Climate and climate change impact on surface water quantity and quality.


Recent research projects

  • French National Project GICC (Gestion de l'Impact du Changement Climatique): HYCCARE - HYdrology, Climate Change, Adaptation and Water Ressources in Burgundy). Coordinator: Alterre Bourgogne
  • French National Project « Relief de la Terre », INSU-CNRS « production et devenir de la matière organique libérée par altérations mécanique et chimique des formations marneuses : approches locales et globales » Coordinator: C. Di Giovani, ISTO, UMRS CNRS 6113, Orléans

  • Regional Project (Regional Council of Burgundy) « Matières organiques dissoutes dans les eaux naturelles du Morvan granitique: dynamique des transferts et relations avec les occupations du sol » coordinator : P. Amiotte Suchet

  • Partnership with the “Agence de l’Eau Seine-Normandie” Matières organiques dissoutes dans les eaux d’écoulement du Morvan granitique : dynamique de production et des transferts, relation avec les occupations du sol et la qualité des milieux aquatiques Coordinator Ph. Amiotte Suchet.

  • FAST Project – « Production et devenir des matières organiques dissoutes dans les écosystèmes faiblement anthropisés » collaboration Paul Nelson (James Cook University, Australia), Catherine Henault (INRA Dijon)


Deputy head of the Earth and Environmental Science Department, University of Burgundy from December 2001 to march 2004 – interim head from march 2003 to march 2004.


Teaching activities

  • Hydrology and hydrogeology

  • Weathering and erosion processes, Transfers of dissolved mineral and organic matter by river

  • Global biogeochemical cycles, carbon geochemical cycle, modelling of biogeochemical cycles with component models (Vensim(c))

  • Stable isotopes of dissolved organic and inorganic carbon

  • Geographical Information System - GIS (Idrisi, ArcGis)


Main publications

Chenot, E., Pellenard, P., Martinez, M., Deconinck, J.-F., Amiotte-Suchet, P., Thibault, N., Bruneau, L., Cocquerez, T., Laffont, R., Pucéat, E., et al. (2016). Clay mineralogical and geochemical expressions of the “Late Campanian Event” in the Aquitaine and Paris basins (France): Palaeoenvironmental implications. Palaeogeography, Palaeoclimatology, Palaeoecology 447, 42–52.
De Pina Tavares, J. et al. (2015), Assessment and mapping the sensitive areas to desertification in an insular Sahelian mountain region Case study of the Ribeira Seca Watershed, Santiago Island, Cabo Verde, CATENA, 128, 214–223, doi:10.1016/j.catena.2014.10.005.
Brulebois, E., T. Castel, Y. Richard, C. Chateau-Smith, and P. Amiotte-Suchet (2015), Hydrological response to an abrupt shift in surface air temperature over France in 1987/88, Journal of Hydrology, 531, Part 3, 892–901, doi:10.1016/j.jhydrol.2015.10.026.
Guigue, J., Mathieu, O., Lévêque, J., Mounier, S., Laffont, R., Maron, P.A., Navarro, N., Chateau, C., Amiotte Suchet, P., and Lucas, Y. (2014). A comparison of extraction procedures for water-extractable organic matter in soils. Eur J Soil Sci 65, 520–530.
Ghirardi, J., Deconinck, J.-F., Pellenard, P., Martinez, M., Bruneau, L., Amiotte Suchet, P., and Pucéat, E. (2014). Multi-proxy orbital chronology in the aftermath of the Aptian Oceanic Anoxic Event 1a: Palaeoceanographic implications (Serre Chaitieu section, Vocontian Basin, SE France). Newsletters on Stratigraphy 47, 247–262.
Camizuli, E., Monna, F., Scheifler, R., Amiotte Suchet, P., Losno, R., Beis, P., Bohard, B., Chateau, C., and Alibert, P. (2014). Impact of trace metals from past mining on the aquatic ecosystem: A multi-proxy approach in the Morvan (France). Environmental Research 134, 410–419.
Gauthier, A., Amiotte-Suchet, P., Nelson, P.N., Leveque, J., Zeller, B., and Henault, C. (2010). Dynamics of the water extractable organic carbon pool during mineralisation in soils from a Douglas fir plantation and an oak-beech forest-an incubation experiment. Plant Soil 330, 465–479.
Tavares, J.P., and Amiotte Suchet, P. (2007). Rainfall erosion risk mapping in volcanic soils of Santiago Island, Cape Verde Archipelago. Africa Geosciences Review 14, 399–414.
Copard, Y., Amiotte Suchet, P., and Di-Giovanni, C. (2007). Storage and release of fossil organic carbon related to weathering of sedimentary rocks. Earth and Planetary Science Letters 258, 345–357.
Amiotte-suchet, P., Linglois, N., Leveque, J., and Andreux, F. (2007). 13C composition of dissolved organic carbon in upland forested catchments of the Morvan Mountains (France): Influence of coniferous and deciduous vegetation. Journal of Hydrology 335, 354–363.
Amiotte Suchet, P., Probst, J.L., and Ludwig, W. (2003). Worldwide distribution of continental rock lithology: Implications for the atmospheric/soil CO2 uptake by continental weathering and alkalinity river transport to the oceans. Global Biogeochem. Cycles 17, 1038, doi : 10.1029/2002GB001891.
Aumont, O., Orr, J.C., Monfray, P., Ludwig, W., Amiotte Suchet, P., and Probst, J.-L. (2001). Riverine-driven interhemispheric transport of carbon. Global Biogeochemical Cycles 15, 393–405.
Semhi, K., Amiotte Suchet, P., Clauer, N., and Probst, J.L. (2000). Impact of the nitrogen fertilizers on the natural weathering erosion processes and fluvial transport in the Garonne basin. Applied Geochemistry 15, 865–878.
Semhi, K., Amiotte Suchet, P., Clauer, N., and Probst, J.L. (2000). Dissolved silica in the Garonne river waters: changes in the weathering dynamics. Environmental Geology 40, 19–26.
Ludwig, W., Amiotte Suchet, P., and Probst, J.-L. (1999). Enhanced chemical weathering of rocks during the last glacial maximum: a sink of atmospheric CO2? Chem. Geol 159, 147–151.
Amiotte Suchet, P., Aubert, D., Probst, J.L., Gauthier-Lafaye, F., Probst, A., Andreux, F., and Viville, D. (1999). d13C pattern of dissolved inorganic carbon in a small granitic catchment: the Strengbach case study (Vosges mountains, France). Chemical Geology 159, 129–145.
Ludwig, W., Amiotte Suchet, P., Munhoven, G., and Probst, J.L. (1998). Atmospheric CO2 consumption by continental erosion: present-day control and implications for the Last Glacial Maximum. Global and Planetary Change 1617, 107–120.
Ludwig, W., Amiotte Suchet, P., and Probst, J.L. (1996). River discharges of carbon to the world’s oceans: determining local inputs of alkalinity and of dissolved and particulate organic carbon. C. R. Acad. Sci. Paris. T. 323, Série IIa 10071014.
Amiotte Suchet, P., and Probst, J.L. (1995). A global model for present day atmospheric/soil CO2 consumption by chemical erosion of continental rocks (GEM-CO2). Tellus 47B, 273–280.
Amiotte Suchet, P., Probst, A., and Probst, J.L. (1995). Influence of acid rain on CO2 consumption by rock weathering: local and global scales. Water, Air and Soil Pollution 85, 1563–1568.
Amiotte Suchet, P., and Probst, J.L. (1993). Modelling of atmospheric CO2 consumption by chemical weathering of rocks: Application to the Garonne, Congo and Amazon basins. Chemical Geology 107, 205–210.
Amiotte Suchet, P., and Probst, J. (1993). Flux de CO2 atmosphérique consommé par altération chimique continentale. Influence de la nature de la roche. C.R. Acad. Sci. Paris t.317, SérieII, 615–622.
Probst, J.L., and Amiotte Suchet, P. (1992). Fluvial suspended sediment transport and mechanical erosion in the Maghreb (North Africa). Hydrol. Sci. Journal 37, 621–637.

Other useful publications

AMIOTTE SUCHET P. (2009) - Production et transfert de carbone dans les hydrosystèmes : approches spatio-temporelles multi-échelles. Mémoire d’Habilitation à Diriger des Recherches (HDR), Université de Bourgogne, 153 p. [pdf]
ANDREUX, F. LINGLOIS, N., ROUX, F., AMIOTTE SUCHET, P., LEVEQUE, J., (2002). Impact of changing forest management on soil organic matter in low mountain acid media. In: A. Violante, P.M. Huang, J.-M. Bollag and L. Gianfreda (Editors), Soil Mineral-Organic Matter-Microorganism Interactions and Ecosystem Health. Elsevier, Amsterdam, pp. 383-407.
AMIOTTE SUCHET P. et PROBST J.L. (1995) - Erosion chimique du bassin versant du Congo: variabilité spatio-temporelle des flux de CO2 consommé par altération de la croute continentale. In "Grands Bassins Fluviaux Periatlantiques: Congo, Niger, Amazone" J.C. Olivry et J. Boulègue eds., ORSTOM, “Colloques et Séminaires”, Paris, p. 51-68.
AMIOTTE SUCHET P. (1995) - Cycle du carbone, érosion chimique des continents et transferts vers les océans, Sciences Géologiques, Mémoires, 97, 156 pp.
PROBST J.L., AMIOTTE SUCHET P. and LUDWIG W. (1994) - Continental erosion and river transports of carbon to oceans. In: "Trends in Hydrology, 1", S.G. PANDALAI Ed., Research Trends, Council of Scientifique Information, TRIVANDRUM, p. 453-468.
AMIOTTE SUCHET P. (1994) - Cycle du carbone, érosion chimique des continents et transferts vers les océans. Thèse de Doctorat de l’Université Louis Pasteur, Strasbourg, 182 pp.
PROBST J.L., AMIOTTE SUCHET P. and TARDY Y. (1992) - Global continental erosion and fluctuations of atmospheric CO2 consumed during the last 100 years. In "Water Rock Interactions", Kharaka Y.K. et Maest A.S. eds., Balkema, Rotterdam, p. 483-486.

Sophie Montuire

Directeur d'Etudes EPHE

Equipe Forme Evolution Diversité - FED

EPHE & UMR CNRS 5561 Biogéosciences

Université de Bourgogne

6 Bd Gabriel

21000 Dijon France

Tél.: 33. (0) - Fax: 63.87

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Paleontological database

Research interests

My main research interests are in paleontology and biodiversity focusing on the evolution of rodents in relation to biotic and abiotic factors.

The three main axes of my research are about:

  • Relations between mammalian communities and climate (size and species richness): The observation of the species richness evolution through time allows to construct some transfert functions in order to quantify climatic parameters. In fact, the correlations between species richness and climatic variations indicate that changes in biodiversity can be used to characterize climatic fluctuations. Several models have been proposed : the ones based on murines and arvicolines allow to quantify past climates since the Pliocene, and a third one has been developed to quantify older climates, especially since the Miocene.
  • Relations between shape and climate: Different parameters characterize biodiversity and are available in paleontological studies, as species richness (number of taxa, abundance), size of organisms and shape. These parameters evolve through time, they can be modified and they can thus registered life histories and environmental conditions. The studies of the evolutionary rates of these different parameters in relation to biotic or abiotic factors will express the dynamic of the biodiversity through time. Rodents and especially arvicolines, my animal model, highlight informations on the relationships between morphological variability and climate at a continental scale through Quaernary times. This group is characterised by a great variability of the tooth patterns both at intra-specific or inter-specific scales in relation to geography or environment.
  • Mecanisms acting on the morphological variability (Evo-Devo): With the new methods developed in morphometry, it is now quite easy to characterize the shape but the origin of the morphological variation and the mecanisms leading to a particular shape are still difficult to understand and to explain. My research concerns the application of a new method in morphometry based on the modularity and integration concept. New studies are now considered to better understand the development of organims, and especially the development of the dental row in the case of arvicolines.


I take part to some education proper to the EPHE or to the University of Burgundy. – The research field developed in Dijon corresponds to the Master EPHE EGB (Environment and Gestion of Biodiversity). Two courses are presented : (1) Data base in Natural Sciences and (2) Morphological analysis. – At the University of Burgundy, I take part to education mainly in palaeontology and for CAPES & AGREG degrees. – I also give courses in evolution in continuing education (IUFM) for schoolmaster.

Publications (1999-2009)

MONTUIRE, S. (1999). Mammalian faunas as indicators of environmental and climatic changes in Spain since the Pliocene. Quaternary Research, 52: 129-137.

COURANT, F., BRUNET-LECOMTE, P., VOLOBOUEV, V., CHALINE, J., QUERE, J.-P., NADACHOWSKI, A., MONTUIRE, S., BAO, G., VIRIOT, L., RAUSCH, R., ERBAJEVA, M., SHI, D. & GIRAUDOUX, P. (1999). Karyological and dental identification of M. limnophilus in Gansu (China), potential host of alveolar Echinococcosis. CRAS Sciences Vie, 322: 473-480.

CHALINE, J., BRUNET-LECOMTE, P., MONTUIRE, S., VIRIOT, L. & COURANT, F. (1999). Anatomy of the Arvicolid radiation (Rodentia): palaeogeographical, palaeoecological history and evolutionary data. Ann. Zoologici fennici, 36: 239-267.

CHALINE, J., ERBAJEVA, M. & MONTUIRE, S. (2000). Upper Pliocene leporids (Mammalia, Lagomorpha) from Montoussé-5 (Hautes-Pyrénées, France). Neues Jahrbuch für Geologie und Paläontologie, 2: 93-106.

MONTUIRE, S. (2000). Letter to the editor. Reply to letter to the editor by J. Rodriguez. Quaternary Research, 54: 436.

MONTUIRE, S. & MARCOLINI, F. (2001). Palaeoenvironmental significance of the mammalian faunas from Italy since the Pliocene. Journal of Quaternary Science, 17 (1): 87-96.

LANDRÉ, J., TRUCHETET, F. MONTUIRE, S. & DAVID B. (2001). Automatic building of a visual interface for content-based multiresolution retrieval of paleontology images. Journal of Electronic Imaging, 10 (4).

DOMMERGUES, J.-L., MONTUIRE, S. & NEIGE, P. (2002). Size patterns through time: the case of early Jurassic ammonites radiation. Paleobiology, 28(4): 423-434.

MARCHAND, H., PAILLAT, G, MONTUIRE, S. & BUTET, A. (2003). Landscape fragmentation and stress in populations of bank voles (Rodentia, Arvicolinae). Biol. J. of the Linnean Society, 80: 37-44.

LEROY, A., MONTUIRE, S. & MARCHAND, D. (2004). Analysis of teeth outlines : a morphometric tool for distinguishing three species of Crocidurinae (Soricidae, Insectivora, Mammalia) in France. J. of Natural History, 38 (2): 259-267.

MONTUIRE, S. & BRUNET-LECOMTE, P. (2004). Relation between climatic fluctuation and morphological variability in Microtus (Terricola) grafi (Arvicolinae, Rodentia) from Bacho Kiro (Bulgaria, Upper Pleistocene). Lethaia, 37: 71-78.

MARCOLONI, F. & MONTUIRE, S. (2004). Morphological variability analysis of Mimomys (Arvicolinae, Rodentia) from the Late Pliocene and Early Pleistocene of Central and South Europe. Neues J. Geol. Paläont. Abh, 231 (2): 277-295.

NAVARRO, N., ZATARAIN, X. & MONTUIRE, S. (2004). Effects of morphometric descriptor changes on statistical classing and morphospaces. Biol. J. Linnean Society, 83: 243-260.

NAVARRO, N., LECUYER, C., MONTUIRE, S., LANGLOIS, C. & MARTINEAU, F. (2004). Oxygen isotope compositions of phosphate from arvicoline teeth and Quaternary climatic changes, Gigny, French Jura. Quaternary Research, 62: 172-182.

COUETTE, S., ESCARGUEL, G. & MONTUIRE, S. (2005). Constructing, bootstrapping and comparing morphometric and phylogenetic trees: a case study of new world monkeys (platyrrhini, primates). Journal of Mammalogy, 86(4): 773-781.

LEGENDRE, S., MONTUIRE, S., MARIDET, O. & ESCARGUEL, G. (2005). Rodents and climate III. The use of sigmodontine rodents as analog for European Tertiary cricetids. EPSL, 235: 408-420.

TOUGARD, C. & MONTUIRE, S. (2006). Pleistocene paleoenvironnemental reconstructions and mammalian evolution in South-East Asia : focus on fossil faunas from Thailand. Quaternary Science Review, 25: 126-141.

NAPPI, A., BRUNET-LECOMTE, P. & MONTUIRE, S. (2006). Intraspecific morphological tooth variability and geographic distribution : application to the Savi’s vole, Microtus (Terricola) savii (Rodentia, Arvicolinae). Journal of Natural History, 40: 345-358.

MONTUIRE, S., MARIDET O. & LEGENDRE, S. (2006). Estimations of Late Neogene climates in Europe using rodents. Palaeogeography, Palaeoclimatology, Palaeoecology, 238: 247-262.

COSTEUR, L., MONTUIRE, S., LEGENDRE, S., MARIDET, O. & HERAN, M.-A. (2007) The Messinian salinity crisis : what happened to the peri-Mediterranean mammalian communities and local climate ?. Geobios, 40: 423-431.

TOUGARD, C., MONTUIRE, S., BRUNET-LECOMTE, P. & FABRE, M. (2008). Evolutionary history of two allopatric Terricola species (Arvicolinae, Rodentia) from molecular and morphological data. Biol. J. Linnean Soc. 93: 309-323.

ESCUDE, E., MONTUIRE, S., DESCLAUX , E., QUERE, J.-P., RENVOISE, E. & JEANNET, M. (2008). Arvicola Lacépède, 1799 (Rodentia, Mammalia): a useful tool for constructing a biochronological framework? Journal of Archaeological Science 35: 1867-1879.

RENVOISE, E. EVANS, A.R., JEBRANE, A., LABRUERE, C., LAFFONT, R. & MONTUIRE, S. (in press). The evolution of mammal tooth pattern: new insights from a developmental prediction model. Evolution.

LAFFONT, R., RENVOISE, E., NAVARRO, N., ALIBERT P. & MONTUIRE, S. (in press). Morphological modularity and assessment of developmental processes within the vole dental row (Microtus arvalis, Arvicolinae, Rodentia). Evolution and Development.

Thierry Rigaud

Thierry RigaudDirecteur de Recherche au CNRS

Equipe Ecologie Evolutive

Laboratoire Biogeosciences

CNRS, UMR 5561

Universite de Bourgogne

6, Blvd Gabriel,

21000 Dijon, France

tel (33) 3 80 39 39 45 /Fax 62 31

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Academic background

  • Graduate studies in Université de Poitiers - 1987

  • DEA (MSc) in Population Biology & Eco-Ethology, Université de Tours - 1988

  • PhD in Population Biology, Université de Tours - 1991

  • Habilitation à Diriger les Recherches, Université de Poitiers - 1999



  • 1992 – 2001        Chargé de Recherche au CNRS, Université de Poitiers

  • 2001 – 2003        Chargé de Recherche au CNRS, Université de Bourgogne, Dijon

  • 2003 – present     Directeur de Recherche au CNRS, Université de Bourgogne, Dijon


Research interests

 My main research interests are in the evolutionary ecology of host-parasite interactions, focusing on the diversity of parasite's strategies of host exploitation and the consequences on host population biology. The main topics of my studies are about:

  •  Manipulation of host sex ratio. I'm interested in vertically-transmitted parasites (Wolbachia (my former favorite parasite!) , microsporidia) as reproductive parasites of their crustacean hosts, their consequences on host reproductive strategies.

  •  Manipulation of host behaviour. The model organisms are acanthocephalan parasites, infecting freshwater crustacean intermediate hosts. I'm interested in investigating the causes for the variability observed in the manipulation (genetics, environment).

  •  Conflicts between manipulative parasites. How do parasites with different transmission strategies coexist in a single host? Are there conflicts and how are they expressed? What are the consequences for the host? I try to address these questions by studying the above-cited parasites.

  •  The role of biological invasions in evolutionary ecology of host-parasite relationships. The model organisms are the invasive amphipods and their parasites.

  •  More recently, I also began projects on sea urchins and their symbionts:  (1)  to understand the role of ectosymbiosis on benthic biodiversity in Antarctica; (2)  to understand how the life cycle of ectosymbiotic crab is shared between two hosts.

Gammarus roeseli


Publications  : please visit the following sites

Paul Alibert


Associate professor in Evolutionary Biology

 (MCF Hors Classe, HDR)

UMR CNRS 5561 Biogéosciences
Université de Bourgogne, Bât. Gabriel

6, boulevard Gabriel, 21 000 DIJON
Tél. : (+) 33 380 39 63 45 Fax : / 62 31
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Birth date: November, 16th 1968
Marital status: Married, 4 children

Citizenship: French (my children have dual nationality, French and German)



  • 2006 Habilitation
    Subject: "From microevolution to macroevolution: some insights from morphometrics" [PDF, in french, 10Mo]
  • 1992- 1995 PhD THESIS Université Montpellier II, Institut des Sciences de l'Evolution.
    Thesis subject: "Genomic coadaptation and speciation in the house mouse model: morphometrical approach of the divergence and developmental stability" Supervisors: Pr. L. Thaler. & Dr. J.-C. Auffray. PhD fellowship: French ministry of Research
  • 1992 Master thesis work (DEA) in Ecology and Evolution. Université Montpellier II
  • 1988-1990 BSc in biology Université Montpellier II

Professionnal experience (research)

  • From September 2015 "Higher Education and Scientific Cooperation Attaché" in Munich, Germany (for the French Ministry of Foreign Affairs)
  • August 2007- december 2008 Sabbatical year for research at the "Zoologische Staatssammlung München" in Munich (Germany), jointly granted by the CNRS (France) and the Alexander von Humboldt Foundation (Germany).
  • 2006 Habilitation
  • 2004-2010 Head of the national network "Morphometry and Shape Evolution" [GDR CNRS 2474 MEF web site]
  • 2003-2006 Head of the team "Differentiation and species" UMR CNRS 5561 Biogéosciences
  • 1997- Present ASSOCIATE PROFESSOR Université de Bourgogne, UMR CNRS 5561 Biogéosciences
  • 1995-1996 LECTURER Université Montpellier II, UMR CNRS 5554 Evolutionary Sciences Institut


  • 2007 : "Alexander von Humboldt" fellowship for experencied researchers (12 +3 months) from the AvH foundation

Host : Zoologische Staatssammlung München, Munich Germany, Collaborator : Dr. rer. nat. Ulrich K. Schliewen
Subject : "Morphometric assessement of differentiation and speciation in riverine African cichlids"

  • 1997: E.U. Marie Curie Postdoctoral Fellowship, Norwich University, UK

Subject: Hybridisation and speciation: a morphological approach using geometric morphometrics and developmental stability on the grasshopper model.
Collaborator: Prof. G.M. Hewitt

  • 1997: "Alexander von Humboldt" postdoctoral fellowship, J. Gutenberg-Universität Mainz, Germany,

Subject: Comparative analysis of the evolutionary trends in dental morphology among fossils and living herbivorous lineages.
Collaborator: Prof. Dr N. Schmidt-Kittler


I have declined both post-doctoral fellowships because of my recruitment as assistant professor in the Université de Bourgogne


  • 1996 : European Science Fundation fellows (EU) for the participation to the ESF Workshop: "Developmental stability, individual performance and population biology", Gilleleje, DANEMARK, Sept. 1996
  • 1992-1995: PhD fellowship: French ministry of Research




Research interests (1992-2015)

My research activities mainly focus on the study of population differentiation and speciation by the use of morphometric approaches. Initiated during the PhD, and largely developed since 1997 in the UMR Biogéosciences in Dijon, my research is structured around three main axes:

  • Axis 1- Morphometric quantification of the differentiation, links with the pattern of genetical differentiation and with the evolutionary history of the taxa considered.
  • Axis 2- Estimation of the impact of morphological differentiation on speciation by the study of developmental instability of hybrids between differentiating taxa.
  • Axis 3- Study of the mechanisms underlying developmental stability.

Model organisms are currently principally fishes (cichlids) but concerned also insects (carabid beetles, drosophila…), sea urchins (regulars and irregulars) and rodents.


Main results - selected publications

A) Articles in journals/contributions to books

Axis 1: Quantification of the differentiation


- Monna F., Camizuli E., Nedjai R., Cattin F., Petit, C. Guillaumet J.-P., Jouffroy-Bapicot I., Bohard B., Chateau C. & Alibert P. (2014) Tracking archaeological and historical mines using mineral prospectivity mapping. Journal of Archaeological Science 49 : 57-69


- Camizuli E., Monna F., Bermond A., Manouchehri N., Besançon S., Losno R., van Oort F., Labanowski J., Perreira A., Chateau C. & Alibert P. (2014) Impact of historical mining assessed in soils by kinetic extraction and lead isotopic ratios. Science of the Total Environment 472 : 425–436


- Cerwenka, A. F., Alibert, P. Brandner, J., Geist, J. & Schliewen, U. K. (2014) Phenotypic differentiation of Ponto-Caspian gobies during a contemporary invasion of the upper Danube River. Hydrobiologia, DOI 10.1007/s10750-013-1668-5.


- Firmat, C., Alibert, P., Losseau, M. Baroiller, J.-F. & Schliewen, U. K. (2013) Successive invasion-mediated interspecific hybridizations and population structure in the endangered cichlid Oreochromis mossambicus PLOS ONE, 8, (5) : e63880


- Monna, F., Jebrane, A,, Gabillot, M., Laffont, R., Specht, M., Bohard, B,; Camizuli, E., Petit, C., Chateau, C. &Alibert, P. (2013) Morphometry of Middle Bronze Age palstaves. Part II – Spatial distribution of shapes in two typological groups, implications for production and exportation. Journal of Archaeological Science40: 507-516.


- Firmat, C., Schliewen, U. K., Losseau M. & Alibert P. (2012) Body shape differentiation at global and local geographic scales in the invasive cichlid Oreochromis mossambicus. Biological Journal of the Linnean Society 105 : 369–381.


- Firmat, C. & Alibert P. (2011) One more alien freshwater fish species in New Caledonia: the three-spot gourami Trichogaster trichopterus (Teleostei: Osphronemidae). Belgian Journal of Zoology 141 (2): 90-92.


- Laffont, R., Firmat, C., Alibert, P., David B., Montuire, S. & Saucède, T. (2011) Biodiversity and evolution in the light of morphometrics: From patterns to processes. C. R. Palevol 10 133–142


- Laffont, R, Renvoisé, E. Navarro, N., Alibert, P. & S. Montuire (2009) Morphological modularity and assessment of developmental processes within the vole dental row (Microtus arvalis, Arvicolinae, Rodentia). Evolution & Development : 11(3): 302-311


- Garnier, S., Magniez-Jannin, F., J.-Y. Rasplus & P. Alibert (2005) When morphometry meets genetics: inferring the phylogeography of Carabus solieri using Fourier analyses of pronotum and male genitalia. Journal of Evolutionary Biology 18: 269-280. [PDF]


- Garnier, S., Alibert, P., Audiot, P., Prieur, B. & J.-Y. Rasplus (2004) Isolation by distance and sharp discontinuities in gene frequencies: implications for the phylogeography of an alpine insect species, Carabus solieri. Molecular Ecology 13: 1883-1897. [PDF]


- Terral, J.-F., Alonso, N., Buxo I Capdevilla, R., Chatti, N., Fabre, L., Fiorentino, G. Marinval, P., Perez-Jorda, G., Pradat, D., Rovira, N. & P. Alibert. (2004) Historical biogeography of olive domestication (Olea europea L.) as revealed by geometrical morphometry applied to biological and archaeological material. Journal of biogeography, 31(1): 63-77. [PDF]


- Bertin, A., David, B., Cézilly, F. & P. Alibert (2002) Quantification of sexual dimorphism in Asellus aquaticus (Crustacea: Isopoda) using outline approaches. Biological Journal of the Linnean Society 77: 523-533. [PDF]


Alibert, P., B. Moureau, J.-L. Dommergues & B. David. (2001) Differentiation at a microgeographical scale within two species of ground beetles, Carabus auronitens and C. nemoralis (Coleoptera, Carabidae): a geometrical morphometric approach. Zoologica Scripta 30 (4): 299-311. [PDF]


- Lenormand, T., Fel-Clair, F., Manolakou, K., Alibert, P., & J. Britton-Davidian (1997) Centromeric transmission bias in laboratory hybrids between wild strains of the two European subspecies of house mice. Genetics 147(3), 1279-1287. [PDF]


- Auffray, J.-C., Alibert, P., Latieule, C. & B. Dod (1996) Relative warp analysis of skull shape changes across the house mouse (Mus musculus) hybrid zone in Europe. Journal of Zoology, London 240: 441-445. [PDF]



Axe 2: Impact of the differentiation

- Renaud, S.,  Alibert, P. & Auffray, J.-C. (2012) Modularity as a source of morphological innovation in the mandible of hybrid mice. BMC Evolutionary Biology12: 141 (1-16)


- Renaud, S., Alibert, P. & J.-C. Auffray (2009) Mandible shape in hybrid mice. Naturwissenschaften 96: 1043–1050


- Garnier, S., Gidaszweski, N., Charlot, M., Rasplus, J.-Y. & P. Alibert (2006)
Hybridization, developmental stability and functional significance of morphological traits in the carabid beetle Chrysocarabus solieri (Coleoptera, Carabidae). Biological Journal of the Linnean Society.89: 151-158 [PDF]


- Saucède, T., Alibert, P., Laurin, B. & B. David (2006) Environmental and ontogenetic constraints on developmental stability in the spatangoid sea urchin Echinocardium (Echinoidea). Biological Journal of the Linnean Society 88: 165-177. [PDF]


Alibert, P. & J.-C. Auffray (2003).Genomic coadaptation, outbreeding depression and developmental instability. In Developmental instability: Causes and Consequences, Ed M. Polak, New York: Oxford University Press, 116-134. [PDF]


- Debat, V., Alibert P. , David, P., Paradis, E. & J.-C. Auffray (2000). Independence between developmental stability and canalization in the skull of the house mouse. Proceeding of the Royal Society of London. B, 267: 423-430. [PDF]


- Auffray, J.-C., Debat, V. & P. Alibert (1999). Shape asymmetry and developmental instability. In On Growth and Form: Spatio-temporal Patterning in Biology, Eds. M. Chaplain et al., London: John Wiley and Sons. pp. 309-324. [PDF]


- Alibert, P., Fel-Clair, F., Manolakou, K., Britton-Davidian, J. & J.-C. Auffray (1997) Developmental stability, fitness and trait size in laboratory hybrids between European subspecies of the house mouse. Evolution 51(4): 1284-1295. [PDF]


- Auffray, J.-C., Alibert, P., Renaud, S., Orth, A. & F. Bonhomme (1996) Fluctuating asymmetry in Mus musculus subspecific hybridization: Traditional and Procrustes comparative approach. In Advances in morphometrics, Eds. Corti, M., Loy, A. & Marcus, L.F., New York: Plenum Press, 275-283. [PDF]


- Britton-Davidian, J., Fel-Clair, F., Lopez, J., Alibert, P., & P. Boursot (2005) Postzygotic isolation between the two European subspecies of the house mouse: estimates from fertility patterns in wild and laboratory-bred hybrids. Biological Journal of the Linnean Society 84: 379-393. [PDF]


- Ganem, G., Alibert, P. & J.B. Searle (1996) An ecological comparison between standard and chromosomally divergent house mice in northern Scotland. Zeitschrift für Saugertierkunde 61, 176-188.


- Alibert, P., Renaud, S., Dod, B., Bonhomme, F. & J.-C. Auffray (1994) Fluctuating asymmetry in the Mus musculus hybrid zone: a heterotic effect in disrupted co-adapted genomes. Proceeding of the Royal Society of London. B, 258: 53-59. [PDF]



 Axe 3: Mechanisms of developmental instability

- Savriama, Y., Stige, L., Gerber, S., Pérez, T., Alibert, P. & David, B. (in press) Impact of sewage pollution on two species of sea urchins in the Mediterranean Sea (Cortiou, France): Radial asymmetry as a bioindicator of stress Ecological Indicators


- Camizuli E., Monna F., Scheifler, R., Amiotte-Suchet, P., Losno, R., Beis, P., Bohard, B., Chateau, C. & Alibert, P. (2014) Impact of trace metals from past mining on the aquatic ecosystem: a multi-proxy approach in the Morvan (France). Environmental Research 134: 410-419



- Monna, F., Camizuli, E., Revelli, P., Biville, C., Thomas, C., Losno, R., Scheifler, R., Bruguier, O., Baron, S., Chateau, C., Ploquin, A., Alibert, P. (2011) Wild brown trout affected by historical mining in the Cévennes National Park, FranceEnvironmental Science & Technology, 45: 6823–6830.


Camizuli E., Monna F., Scheifler, R., Amiotte-Suchet, P., Losno, R., Beis, P., Bohard, B., Chateau, C. & Alibert, P. (2014) Impact of trace metals from past mining on the aquatic ecosystem: a multi-proxy approach in the Morvan (France). Environmental Research 134: 410-419


- Ondo Zue Abaga N., Alibert, P., Dousset S., Savadogo P. W., Savadogo M. & Sedogo M. (2011) Insecticide residues in cotton soils of Burkina Faso and effects of insecticides on fluctuating asymmetry in honey bees (Apis mellifera Linnaeus). Chemosphere 83: 585–592


 - Stige, L. C., David, B. & P. Alibert (2006) On hidden heterogeneity in directional asymmetry - can systematic bias be avoided? Journal of Evolutionary Biology 19: 492-499. [PDF]


- Alibert, P., L. Bollache, D. Corberant, V. Guesdon & F. Cézilly (2002). Parasitic infection and developmental stability: fluctuating asymmetry in Gammarus pulex infected with two acanthocephalan species. Journal of Parasitology 88(1): 47-54. [PDF]


- Auffray, J.-C., Renaud, S., Alibert, P., & E. Nevo (1999) Developmental stability and adaptative radiation in Spalax ehrenbergi superspecies in the middle East. Journal of Evolutionary Biology 12: 207-221. [PDF]



B) Book

Alibert, P (2013) La variation phénotypique et son contrôle. Exemples d’apports de la morphométrie à l’étude de l’Evolution. Presses Académiques Francophones, 92p., ISBN-13: 978-3-8416-2009-5

C) Published contribution to academic conferences

- Alibert, P., Renaud, S., Dod, B., Bonhomme, F. & J.-C. Auffray (1994) Developmental stability in natural hybrid population of the house mouse. Mammalia 57(4), 620.


D) Popularization papers

- Alibert, P. (auteur référent), Claude, J., Debat, V., Garnier, S. & P. Neige (co-auteurs). Les contraintes. In "Biologie Evolutive" Ed. Thomas, F., Raymond, M. & Lefebvre T., De Boeck publisher. (2010).pp. 245-266


- Terral, J.-F., Alonso, N., Buxo I Capdevilla, R., Chatti, N., Fabre, L., Fiorentino, G. Marinval, P., Perez-Jorda, G., Pradat, D., Rovira, N. & P. Alibert (2005) Nouvelles données sur l'histoire et la biogéographie de la domestication de l'olivier en Méditerranée nord-occidentale : la mémoire des endocarpes. In Archéo-Plantes 2: Modernité


- David, B., Alibert, P. & P. Neige (2004) Promenades dans un espace des formes. Pour la Science, Dossier n°44: 46-50. [PDF]


Teaching experience

+ Université de Bourgogne (since 1997) around 250 hours/year from the 2nd to the 5th year

Repartition of teaching: around 25% CM (=lectures) 40% TD (group work limited to 30 students) et 35% TP (practical teaching) in the french system
- Evolutionary Biology
- Conservation Biology

- Biostatistics

- Invertebrate Zoology
- Ecology
- Morphometry


+ Université Montpellier II (1992-1996) around 90 hours/year

- Vertebrate Zoology
- Mendelian Genetics
- Cell Biology


Last update: april 2011

Marie-Jeanne Perrot-Minnot

Senior lecturer in Evolutionary Ecology


Marie-Jeanne Perrot-Minnot Equipe Ecologie Evolutive

UMR-CNRS 6282 Biogeosciences

Universite de Bourgogne

6, Blvd Gabriel,

21000 Dijon, France


Contact information

tel (33) 3 80 39 63 40 /Fax 62 31

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Academic background


  • HDR, Université de Bourgogne, 2007
  • PhD in Agronomical Sciences and Evolution, ENSAM – 1993
  • DEA (MSc) in Evolutionary Ecology, ENSAM/Université Montpellier II – 1990
  • Graduate studies in Agronomical Sciences, Crop Protection (Ingeneer), Ecole Nationale Supérieure Agronomique, Montpellier (ENSAM) - 1987.



Research interests


My main current interest is in the evolutionary ecology of host-parasite interactions, more specifically in parasitic manipulation. The model organisms are acanthocephalan parasites, infecting freshwater crustacean intermediate hosts and fish or bird final hosts.

I am addressing the evolutionary significance of parasite-induced behavioural alterations with a specific emphasis on changes in anti-predator defenses (such as odour-evoked escape responses, choice of microhabitat). I am also investigating the adaptive value of carotenoid-based pigmentation in some acanthocephalan species.

More recently, I have started exploring the mechanistic basis of parasite manipulation, by focusing on candidate neuromodulatory pathways.

The study of parasite-induced alterations is now addressing the existence of a behavioural syndrome in infected manipulated hosts. Ultimately, this more integrated approach should improve our understanding of the evolution of parasite manipulation and of complex life cycle.



Teaching and Administration


  • Courses in Evolutionary Biology (BSc in Biology 3rd level, Master in Behavioral Ecology and Wildlife Management),
  • Introduction to evolutionary parasitology (BSc, 3rd level, Master in Behavioral Ecology and Wildlife Management),
  • Courses in Behavioral Ecology (Master in Behavioral Ecology and Wildlife Management)


link to the web site of our Master program in Behavioral Ecology and Wildlife Management


  • Elected member of the University board (2008-2012)
  • Director of "GIS AGRALE" (Pole in Agronomical, Food and Environment Sciences) (2009-2011)



Previous positions and research projects


1995- 1999 : Assistant Professor, laboratoire Ecologie Animale et Zoologie agricole, INRA - Ecole Nationale Supérieure Agronomique, Montpellier (France)


  • Haplo-diploidy in arrhenotokous tetranychid mites and Wolbachia infection
  • Pseudo-arrhenotoky in phytoseiid mites.


1994-1995 : Post-doctoral position, Pr J.H. Werren’s lab., University of Rochester (USA), Lavoisier grant (french Ministry of foreign affairs)


  • Research on Wolbachia infection and how bacteria density and strains affect cytoplasmic incompatibility in the jewel wasp Nasonia vitripennis.



Publications on parasitic manipulation

David, G. M., Staentzel, C., Schlumberger, O., Perrot-Minnot, M.-J., Beisel, J.-N., Hardion, L. A minimalist macroparasite diversity in the round goby of the Upper Rhine reduced to an exotic Acanthocephalan lineage. Parasitology, in press.


Perrot-Minnot, M.-J., Špakulová, M., Wattier, R., Kotlík, P., Düşen, S., Aydoğdu, A. and Tougard, C. 2018. Contrasting phylogeography of two Western Palaearctic fish parasites despite similar life cycles. The Journal of Biogeography, 45, 101-115.


Perrot-Minnot, M.-J.,Banchetry, L. & Cézilly, F. 2017. Anxiety-like behaviour increases safety from fish predation in an amphipod crustacea. Royal  Society Open Science, 4, 171558.

Parrot, S., Pavón Vergés M., Perrot-Minnot, M.-J., Deneroy, L. 2017. External influences on Invertebrate brain histamine and related compounds via an automated derivatization method for capillary electrophoresis. ACS Chemical Neuroscience, 20, 1839-1846.


Perrot-Minnot, M.-J., Maddaleno, M. & Cézilly, F. 2016. Parasite-induced inversion of geotaxis in a freshwater amphipod: a role for anaerobic metaboilsm?. Functional Ecology, 30, 780–788.


Perrot-Minnot, M.-J., Sanchez-Thirion, K. & Cézilly, F. 2014. Multidimensionality in host manipulation mimicked by serotonin injection. Proceedings of the Royal Society of London, B, Biological Sciences, 20141915.


David, M., Salignon, M. & Perrot-Minnot, M.-J. 2014. Shaping the antipredator strategy: flexibility, consistency, and behavioral correlations under varying predation threat. Behavioral Ecology, 25: 1148-1156.


Cézilly, F., Perrot-Minnot, M.-J. & Rigaud, T. 2014. Cooperation and conflict in host manipulation by parasites. Frontiers in Microbiology, 5, 248.

Dianne, L., Perrot-Minnot, M.-J., Bauer, A., Guvenatam, A. & Rigaud, T. 2014. Parasite-induced alteration of plastic response to predation threat: increased refuge use but lower food intake in Gammarus pulex infected with the acanothocephalan Pomphorhynchus laevis. International Journal for Parasitology, 44: 211-216.


Perrot-Minnot, M.-J., 2013. Parasites as puppet masters: an unnecessary evolutionary excursion or a framework with real explanatory power? TREE (book review), 28: 195-196.


Perrot-Minnot, M.-J., Dion, E. & Cézilly, F. 2013.  Modulatory effects of the serotonergic and histaminergic systems on reaction to light in the crustacean Gammarus pulex. Neuropharmacology, 75:  31-37


Cézilly, F.,  Favrat, A. & Perrot-Minnot, M.-J. 2013. Multidimensionality in parasite-induced phenotypic alterations: ultimate versus proximate aspects. Journal of Experimental Biology , 216: 27–35.


Perrot-Minnot, M.-J. & Cézilly, F. 2013. Investigating candidate neuromodulatory systems underlying parasitic manipulation: concepts, limitations and prospects. Journal of Experimental Biology, 216: 134-141.


Perrot-Minnot, M.-J., Maddaleno, M., Balourdet, A. & Cézilly, F. 2012. Host manipulation revisited: no evidence for a causal link between altered photophobia and increased trophic transmission of amphipods infected with acanthocephalans. Functional Ecology, 26 : 1007-1014.


Špakulová M., Perrot-Minnot M.-J. & Neuhaus B. 2011. Resurrection of Pomphorhynchus tereticollis (Rudolphi, 1809) (Acanthocephala: Pomphorhynchidae) based on new morphological and molecular data. Helminthologia, 48: 268–277.


 Médoc, V., Rigaud, T., Motreuil, S., Perrot-Minnot, M.-J. & Bollache, L. 2011. Paratenic hosts as regular transmission route in the acanthocephalan Pomphorhynchus laevis: potential implications for food webs. Naturwissenschaften, 98:825–835. 


Dianne, L., Perrot-Minnot, M.-J., Bauer, A, Gaillard, M. Léger, E. & Rigaud, T. 2011. Protection first then facilitation: a manipulative parasite modulates the vulnerability to predation of its intermediate host according to its own developmental stage. Evolution, 65: 2692-2698. 


Perrot-Minnot, M.-J., Gaillard, M., Dodet, R. & Cézilly, F. 2011. Interspecific differences in carotenoid content and sensitivity to UVB radiation in three Acanthocephalan parasites exploiting a common intermediate host. International Journal for Parasitology, 41: 173-181. 


Dianne, L., Rigaud, T., Léger, E. Motreuil, S., Bauer, A. & Perrot-Minnot, M.-J. 2011. Intraspecific conflict over host manipulation between different larval stages of an acanthocephalan parasite. Journal of Evolutionary Biology, 23: 2648-2655. 


Rigaud, T., Perrot-Minnot, M.-J. & Brown, M. J. F. 2010.Parasite and host assemblages: embracing the reality will improve our knowledge of parasite transmission and virulence. Proceedings of the Royal Society of London B, 277: 3693-3702. 


Cézilly, F. & Perrot-Minnot, M.-J. 2010. Interpreting multidimensionality in parasite-induced phenotypic alterations: panselectionism versus parsimony. Oikos, 119: 1224-1229.

Cézilly, F., Thomas, F. Médoc, V. & Perrot-Minnot, M.-J. 2010. Host-manipulation by parasites with complex life cycles: adaptive or not? Trends in Parasitology, 26: 311-317. 


Sanchez, M.I., Thomas, F., Perrot-Minnot, M.-J., Biron, D.G., Bertrand-Michel, J. & Misse, D. 2009. Neurological and physiological disorders in Artemia harboring manipulative cestodes. Journal of Parasitology, 95: 20-24.


Kaldonski, N., Perrot-Minnot, M.-J., Dodet, R., Martinaud, G. & Cézilly, F. 2009. Carotenoid-based colour of acanthocephalan cystacanths plays no role in host manipulation. Proceedings of the Royal Society B: Biological Sciences, 276 : 169-176.


Kaldonski, N., Perrot-Minnot, M.-J., Motreuil, S. & Cézilly, F. 2008. Infection with acanthocephalans increases the vulnerability of Gammarus pulex (Crustacea: Amphipoda) to non-host invertebrate predators. Parasitology, 135: 627-632.


Lagrue, C., Kaldonski, N., Perrot-Minnot, M.-J., Motreuil, S. & Bollache, L. 2007. Altered drift behavior and increased vulnerability to predation in intermediate hosts infected by an acanthocephalan parasite: field evidence for adaptive manipulation. Ecology, 88: 2839-2847.


Kaldonski, N., Perrot-Minnot, M.-J. & Cézilly, F. 2007. Differential influence of two acanthocephalan parasites on anti-predator behaviour of their intermediate host. Animal Behaviour, 74 : 1311-1317.

Perrot-Minnot, M.-J., Kaldonski, N. & Cézilly, F. 2007. Susceptibility to predation and anti-predator behaviour in an acanthocephalan-infected amphipod: a test for the manipulation hypothesis. International Journal for Parasitology, 37 : 645-651.

Tain, L., Perrot-Minnot, M.-J., & Cézilly, F. 2007. Differential influence of Pomphorhynchus laevis (Acanthocephala) on brain serotonergic activity in two congeneric host species. Biology Letters, 3: 68-71.


Tain, L., Perrot-Minnot, M.-J., & Cézilly, F. 2006. Altered host behaviour and brain serotonergic activity caused by acanthocephalans: evidence for specificity. Proceedings of the Royal Society B: Biological Sciences, 273 : 3039-3045.

Ponton, F., Lefevre, T., Lebarbenchon, C., Thomas, F., Loxdale, H., Marche, Renault, L., Perrot-Minnot, M.-J. & Biron, D. 2006. Behavioural manipulation in gammarids harbouring trematodes and acanthocephalans: a comparative study of the proximate factors using proteomics. Proceedings of the Royal Society B: Biological Sciences, 273:2869-2877.

Bauer, A., Haine, E. H., Perrot-Minnot, M.-J., & Rigaud, T. 2005. Polymorphus minutus (Acanthocephala) alters the geotactic and clonging behaviours of two intermediate hosts: Gammarus pulex (native host) and Gammarus roeseli (invasive host). Journal of Zoology, 267: 39-43.

Cézilly, F., Perrot-Minnot, M.-J. 2005. Studying adaptive changes in the behaviour of infected hosts: A long and winding road. Behavioural Processes, 68: 223-228.

Gaillard, M., Juillet, C., Cézilly, F., Perrot-Minnot, M.-J., 2004. Comparative study of carotenoid content of two freshwater amphipod species (Gammarus pulex and G. roeseli) and their common Acanthocephalan parasite Polymorphus minutus. Comparative Biochemistry and Physiology, serie B, 129: 129-136.

Perrot-Minnot, M.-J. 2004. Larval morphology, genetic divergence, and contrasting levels of host manipulation between forms of Pomphorhynchus laevis (Acanthocephala). International Journal for Parasitology, 34 :45-54.


Publications on Wolbachia

Perrot-Minnot, M.-J
., Cheval, B., Migeon, A. & Navajas, M. 2002. Contrasting effects of Wolbachia on cytoplasmic incompatibility and fecundity in the haplodiploid mite Tetranychus urticae. Journal of Evolutionary Biology, 15: 808-817.


Perrot-Minnot, M.-J. & Werren, J. H. 2001. Meiotic and mitotic instability of two EMS-produced centric fragments in the haplodiploid wasp Nasonia vitripennis . Heredity, 87 : 8-16.


Perrot-Minnot, M.-J. & Werren, J. H. 1999. Wolbachia infection and incompatibility dynamics in experimental selection lines. Journal of Evolutionary Biology, 12 : 272-282.


Perrot-Minnot, M.-J. & Norton, R. A. 1997. Obligate thelytoky in oribatid mites: no evidence for Wolbachia-inducement. The Canadian Entomologist, 129 : 691-698.


Perrot-Minnot, M.-J., Guo, L. R. & Werren, J. H. 1996. Single and double infections with Wolbachia in the parasitic wasp Nasonia vitripennis: effects on compatibility. Genetics,143: 961-72.


Publications on mites’ reproductive system


Perrot-Minnot, M.-J., Migeon, A. & Navajas, M. 2004. Intergenomic interactions affect female reproduction : evidence from introgression and inbreeding depression in a haplodiploid mite. Heredity, 93: 551-558.


Perrot-Minnot, M.-J., Lagnel, J., Migeon, A. & Navajas, M. 2000b. Tracking paternal genes with DALP markers in a pseudoarrhenotokous reproductive system: biparental transmission but haplodiploid like inheritance in the mite Neoseiulus californicus. Heredity, 84: 702-709.


Perrot-Minnot, M.-J., Lagnel, J., Desmarais, E. & Navajas, M. 2000a. Isolation and characterization by direct amplification of length polymorphisms (DALP) of codominant genetic markers with mendelian inheritance in Neoseiulus californicus (Acari: Phytoseiidae). Experimental and Applied Acarology, 24: 795-803.


Perrot-Minnot, M.-J. & Navajas, M. 1995. Biparental inheritance of RAPD markers in males of the pseudo-arrhenotokous mite Typhlodromus pyri. Genome, 38 : 838-844.





Voordouw, M. J., Stebbins, G ., Robinson, H. E., Perrot-Minnot M.-J., Rigaud, T., & Anholt, B. R. 2008. Genetic variation in the primary sex ratio in populations of the intertidal copepod, Tigriopus californicus, is widespread on Vancouver Island. Evolutionary Ecology Research 10 : 1007-1023.


Wattier, R., Beguet, J., Gaillard, M., Müller, J. C., Bollache, L. & Perrot-Minnot, M.-J. 2006. Molecular markers for systematic identification and population genetics of the invasive Ponto-Caspian freshwater gammarid Dikerogammarus villosus (Crustacea, Amphipoda). Molecular Ecology Notes, 6: 487–489.

Haine, E.H., Brondani, E., Hume, K. D., Perrot-Minnot, M.-J., Gaillard, M. & Rigaud, T., 2004. Coexistence of three microsporidia parasites in populations of the freshwater amphipod Gammarus roeseli : Evidence for vertical transmission and positive effect on reproduction. International Journal of Parasitology, 34: 1137-1146.

Devin, S., Bollache, L., Beisel, J.-N., Moreteau, J.-C. & Perrot-Minnot, M.-J. 2005. Pigmentation polymorphism in the invasive amphipod species Dikerogammarus villosus: some insights into its maintenance. Journal of Zoology, 264: 391-397.

Navajas, M., Perrot-Minnot, M.-J., Lagnel ,J., Migeon, A., Bourse, T. & Cornuet, J.-M. 2002. Genetic structure of a greenhouse population of the spider mite Tetranychus urticae: spatio-temporal analysis with microsatellite markers. Insect Molecular Biology, 11: 157-165.

Navajas, M., Tsagkarakov, A., Lagnel, J. & Perrot-Minnot, M.-J. 2000. Genetic differentiation in Tetranychus urticae (Acari : Tetranychidae): polymorphism, host races or sibling species ? Experimental and Applied Acarology, 24: 365-376.


Werren, J. H. & Perrot-Minnot, M.-J. 1999. An antennapedia-like mutation in Nasonia vitripennis. Journal of Heredity, 90 : 319-320.


Westphal, E., Perrot-Minnot, M.-J., Kreiter, S. & Guttierez, J. 1992. Hypersensitive reaction of Solanum dulcamara to the gall mite Aceria cladophtirus causes an increased susceptibility to Tetranychus urticae. Experimental and Applied Acarology, 15 : 15-26


Book Chapters


Perrot-Minnot, M.-J. & Cézilly, F. 2010. Mechanisms of parasite-induced behavioral changes. Encyclopedia of Animal Behavior Breed, M. D. & Moore, J., eds. In Disease, Moore, J., section editor. Academic Press, Oxford (online encyclopedia).


Perrot-Minnot, M.-J. & Cézilly, F. 2010. Parasite infection and host's behaviour. Encyclopedia of Behavioral Neuroscience Koob, G., Le Moal, M. & Thompson, R., eds. In Ethology and neuroethology, Thierry, B., section editor. Academic Press, Oxford (online encyclopedia).


Perrot-Minnot, M.-J. & Cézilly, F. 2009. Parasites and Behaviour. In Ecology and Evolution of Parasitism (Eds. F. Thomas, J.-F. Guégan, F. Renaud). Oxford University Press, Oxford (revised and translated version of the chapter below).


Perrot-Minnot, M.-J. & Cézilly, F. 2007. Parasites et comportement. In Ecologie et Evolution des systèmes parasités (Ed. F. Thomas, J.-F. Guégan, F. Renaud). Dunod, Paris.

Yannick Moret

Directeur de Recherche CNRS





Équipe Écologie Évolutive

UMR 6282 BioGéoSciences CNRS/Université Bourgogne Franche Comté

6 boulevard Gabriel, 21000 Dijon, France

tel: (+33) 3 80 39 90 24

fax: (+33) 3 80 39 62 31

E-mail: Cette adresse e-mail est protégée contre les robots spammeurs. Vous devez activer le JavaScript pour la visualiser.



Current research

My research interests focus on host-parasite interactions and ecological immunology using fresh water amphipod crustaceans (e.g. Gammarus sp.) and the yellow mealworm beetles, Tenebrio molitor, as study organisms. Current projects include:


  • Examining the influence of immunosuppressing parasites on the evolution host immune defences in Gammarus sp.
  • Identifying the role of dietary carotenoids on innate immune defences in Gammarus sp.
  • Studying the evolutionary ecology of immune priming within and across generations in the mealworm beetle, Tenebrio molitor.


 Curriculum vitae

2016 - actual. Directeur de Recherche CNRS, Équipe Écologie Évolutive, UMR CNRS 6282 Biogéosciences, Université Bourgogne Franche Comté, France.

2005 - 2016. Chargé de Recherche CNRS, Équipe Écologie Évolutive, UMR CNRS 6282 Biogéosciences, Université Bourgogne Franche Comté, France.

2004 - 2005. Natural Environment Research Council (NERC) Fellow, Department of Animal & Plant Sciences, University of Sheffield, UK.

2002 - 2004. Marie Curie Research Fellow, Department of Animal & Plant Sciences, University of Sheffield, UK.

2001. PhD, Swiss Federal Institute of Technology (ETH) of Zürich, Switzerland.

1996. Diplôme d'Etudes Approfondies (D.E.A.), Université de Tours, France.




(53) Dhinaut, J., Chogne, M., Moret, Y. 2018 Trans-generational immune priming in the mealworm beetle protects eggs through pathogen-dependent mechanisms imposing no immediate fitness cost for the offspring. Developmental and Comparative Immunology 79, 105-112.



(52) Dhinaut, J., Chogne, M., Moret, Y. 2017 A dietary carotenoid reduces immunopathology and enhances longevity through an immune depressive effect in an insect model. Scientific Reports 7, 12429.

(51) Vogelweith, F., Moret, Y., Thiéry, D., Delbac, L., Moreau, J. 2017 No evidence of an immune adjustment in response to a parasitoid threat in Lobesia botrana larvae. Journal of Insect Physiology 102, 7-11.

(50) Labaude, S., Moret, Y., Cézilly, F., Charel R., Rigaud, T. Variation in the immune state of Gammarus pulex (Crustacea, Amphipoda) according to temperature: Are extreme temperatures a stress? Developmental and Comparative Immunology 76, 25-33.

(49) Monceau, K., Dechaume-Moncharmont, F-X., Moreau, J., Lucas, C., Capoduro, R., Motreuil, S. Moret, Y. 2017 Personality, immune response and reproductive success: an appraisal of the pace-of-life syndrome hypothesis. Journal of Animal Ecology 86, 932-942.

(48) Monceau, K., Moreau, J., Richet, J., Motreuil, S., Moret, Y., Dechaume-Moncharmont, F-X. 2017 Larval Personality does not predict adult personality in an holometabolous insect. Biological Journal of the Linnean Society 120, 869-878.

(47) Dhinaut, J., Chogne, M., Moret, Y. 2017 Immune priming specificity within and accross generations reveals the range of pathogens affecting evolution of immunity in an insect. Journal of Animal Ecology doi: 10.1111/1365-2656.12661.



(46) Coustau, C., Kurtz, J., Moret, Y. 2016 A novel mechanism of immune memory unveiled at the invertebrate-parasite interface. Trends in Parasitology 32, 353-355.

(45) Vogelweith, F., Moret, Y., Monceau, K., Thiéry, D., Moreau, J. 2016 The relative abundance of hemocyte types in a polyphagous moth larva depends on diet. Journal of Insect Physiology 88, 33-39.



(44) Dubuffet A., Zanchi C., Boutet G., Moreau J., Teixeira M., Moret, Y. 2015 Trans-generational Immune Priming Protects the Eggs Only against Gram-Positive Bacteria in the Mealworm Beetle PLoS Pathogens 11, e1005178.

(43) Vogelweith F., Moreau J., Thiéry D., Moret, Y. 2015 Food-mediated modulation of immunity in a phytophagous insect: an effect of nutrition rather than parasitic contamination. Journal of Insect Physiology 77, 55-61.

(42) Babin A., Saciat C., Teixeira M., Troussard J-P., Motreuil S., Moreau J., Moret Y. 2015 Limiting immunopathology: interaction between carotenoids and enzymatic antioxidant defences. Developmental & Comparative Immunology 49, 278-281.

(41) Muller K., Thiéry D., Moret Y., Moreau, J. 2015 Male larval nutrition affects adult reproductive success in the wild European grapevine moth (Lobesia botrana). Behaviour Ecology and Sociobiology 69, 39-47.

(40) Muller K., Vogelweith F., Thiéry D., Moret Y., Moreau, J. 2015 Immune benefits from alternative host plants could maintain polyphagy in a phytophagous insect. Oecologia 177, 467-475.


(39) Vogelweith F., Thiéry D., Moret Y., Colin E., Motreuil S., Moreau, J. 2014 Defense strategies used by two sympatric vineyards moth pests. Journal of Insect Physiology 64, 54-61.



(38) Vogelweith F., Dourneau M., Thiéry D., Moret Y., Moreau J. 2013 Geographical variation in parasitism shapes larval immune function in a phytophagous insect. Naturwissenschaften 100, 1149-1161.

(37) Vogelweith F., Thiéry D., Moret Y., Moreau J. 2013 Immunocompetence increases with larval body size in a phytophagous moth. Physiological Entomology 38, 219-225.

(36) Vogelweith F., Moret Y., Thiéry D., Moreau J. 2013 Lobesia botrana larvae develop faster in the presence of parasitoids. PLoS One 8, e72568.



(35) Moret, Y., Moreau, J. 2012 The immune role of the arthropod exoskeleton. Invertebrate Survival Journal 9, 200-206.

(34) Ruiz-Gonzalez, M.X., Bryden, J., Moret, Y., Reber-Funk, C., Schmid-Hempel, P., Brown M.J.F. 2012 Dynamic transmission, host quality and population structure in a multihost parasite of bumblebees. Evolution 66, 3053-3066.

(33) Moreau, J., Martinaud, G., Troussard, J-P., Zanchi, C., Moret, Y. 2012 Trans-generational immune priming is constrained by the maternal immune response in an insect. Oikos 121, 1828-1832.

(32) Zanchi, C., Troussard, J-P., Moreau, J., Moret, Y. 2012 Relationship between maternal transfer of immunity and mother fecundity in an insect. Proceedings of the Royal Society - Biological Sciences 279, 3223-3230.



(31) Vogelweith, F., Thiery, D., Quaglietti, B., Moret, Y., Moreau, J. 2011 Host plant variation plastically impacts different traits of the immune system of a phytophagous insect. Functional Ecology 25, 1241-1247.

(30) Zanchi, C., Troussard, J-P., Martinaud, G., Moreau, J., Moret, Y. 2011 Differential expression and costs between maternally and paternally derived immune priming for offspring in an insect. Journal of Animal Ecology 80, 1174-1183.



(29) Moret, Y., Rigaud, T., Motreuil, S., Troussard, J.-P., Moreau, J. 2010 Condition-dependent ecdysis and immunocompetence in the amphipod crustacean, Gammarus pulex. Biology Letters 6: 788-791.

(28) Babin, A., Biard, C., Moret, Y. 2010 Dietary supplementation with carotenoids improves immunity without increasing its cots in a crustacean. American Naturalist 176, 234-241.

(27) Cornet, S., Sorci, G., Moret, Y. 2010 Biological invasion and parasitism: invaders do not suffer from physiological alterations of the acanthocephalan Pomphorhynchus laevis. Parasitology 137, 137-147.



(26) Schulenburg, H., Kurtz, J. Moret, Y., Siva-Jothy, M.T. 2009 Introduction. Ecological immunology. Philosphical Transaction of the Royal Society of London B-Biological Sciences 364, 3-14.

(25) Cornet, S., Franceschi, N., Bauer, A., Rigaud, T., Moret, Y. 2009 Immune depression induced by acanthocephalan parasites in their intermediate crustacean host: consequences on super-infection risk and links with other host manipulation. International Journal for Parasitology 39, 221-229.

(24) Cornet, S., Biard, C., Moret, Y. 2009 Variation of immune defence among populations of Gammarus pulex (Crustacea: Amphipoda). Oecologia 159, 257-269.

(23) Moret, Y., Schmid-Hempel, P. 2009 Immune responses of bumblebee workers as a function of individual and colony age: senescence versus plastic adjustment of the immune function. Oikos 118, 371-378.

(22) Ruiz-Gonzalez, M.X., Moret, Y., Borwn M.J.F. 2009 Rapid induction of the immune density-dependent prophylaxis in adult social insects. Biology Letters 5, 781-783.



(21) Castella, G., Chapuisat, M., Moret, Y., Christe, P. 2008 The presence of conifer resin decreases the use of the immune system in wood ants. Ecological Entomology 33, 408-412.
(20) Haine, E.R., Pollitt, L.C. Moret, Y., Siva-Jothy, M.T. & Rolff, J. 2008 Temporal patterns in immune responses to a range of microbial insults (Tenebrio molitor). Journal of Insect Physiology 55, 1090-1097.

(19) De Souza, D.J., Vlaenderen, J.V., Moret, Y., Lenoir, A. 2008) Immune response affects ant trophollactic behaviour. Journal of Insect Physiology 54, 828-832.

(18) Haine, E.R., Moret, Y., Siva-Jothy, M.T. & Rolff, J. 2008 Antimicrobial defence and persistent infection in insects. Science 322, 1257-1259.



(17) Moret, Y., Bollache, L. Watier, R., Rigaud, T. 2007 Is the host or the parasite the most adapted in an amphipod-acanthocephalan relationship? A case study in a biological invasion context. International Journal for Parasitology 37, 637-644. [ pdf ]

(16) Cornet, S., Biard, C., Moret, Y. 2007 Is there a role for antioxidant carotenoids in limiting self-harming immune response in invertebrates? Biology Letters 3, 284-288. [ pdf ]

(15) Franceschi, N. Rigaud, T. Moret, Y., Hervant, F., Bollache, L. 2007 Behavioural and physiological effects of the trophically transmitted cestode parasite Cyathocephalus truncatus on its intermediate host, Gammarus pulex. Parasitology 134, 1834-1847. [ pdf ]



(14) Moret, Y. 2006 'Trans-generational immune priming': specific enhancement of the antimicrobial immune response in the mealworm beetle, Tenebrio molitor. Proceedings of the Royal Society B 273, 1399-1405. [ pdf ]



(13) Siva-Jothy, M. T., Moret, Y., Rolff, J. 2005 Insect immunity: An evolutionary ecology perspective. Advance in Insect Physiology 32, 1-48. [ pdf ]



(12) Moret, Y., Schmid-Hempel, P. 2004 Social life history response to individual immune-challenge of workers of Bombus terrestris L.: a possible new co-opérative phenomenon. Ecology Letters 7, 146-152. [ pdf ]



(11) Brown, M.J.F., Moret, Y., Schmid-Hempel, P. 2003. Activation of host constitutive defence by an intestinal trypanosome parasite of bumble bees. Parasitology 126, 253-260. [ pdf ]

(10) Plaistow, S. J., Outreman, Y. Moret, Y., Rigaud, T. 2003 Variation in the risk of being wounded: an overlooked factor in studies of invertebrates immune function? Ecology Letters 6, 489-494. [ pdf ]

(9) Moret, Y. 2003 Explaining variable costs of the immune response: selection for specific versus non-specific immunity and facultative life history change. Oikos 102, 213-216. [ pdf ]

(8) Moret, Y., Siva-Jothy, M.T. 2003 Adaptive innate immunity? Responsive-mode prophylaxis in the mealworm beetle, Tenebrio molitor. Proceedings of the Royal Society B 270: 2475-2480. [ pdf ]

(7) Rigaud, T., Moret, Y. 2003 Differential phenoloxidase activity between native and invasive gammarids infected by local acanthocephalans: differential immunosuppression ? Parasitology 127, 571-577. [ pdf ]



(6) Doums, C., Moret, Y., Benelli, E. & Schmid-Hempel, P. 2002 Senescence of immune defence in Bombus workers. Ecological Entomology 27, 138-144. [ pdf ]



(5) Moret, Y., Schmid-Hempel, P. 2001. The Bioenergetics of the immune system. Science 292: 855-856.

(4) Moret, Y., Schmid-Hempel, P. 2001. Immune defence in offspring. Nature 414, 506. [ pdf ]



(3) Moret, Y., Schmid-Hempel, P. 2000 Survival for immunity: Activation of the immune system has a price for bumblebee workers. Science 290, 1166-1168. [ pdf ]

(2) Moret, Y., Juchault, P., Rigaud, T. 2000 Wolbachia endosymbiont responsible for cytoplasmic incompatibility in a terrestrial crustacean: effects in natural and foreign hosts. Heredity 86, 325-332. [ pdf ]

(1) Moret, Y. 2000 The price of immune response: implications for natural selection . M/S médecine sciences 17, 270-271.


Book Chapter

Rigby, M. C. & Moret, Y. (2000) Life-history trade-offs with immune defenses. In Evolutionary Biology of Host-Parasite Relationships: Theory Meets Reality. R. Poulin, S. Morand, and A. Skorping, Eds (Elsevier Science) pp 129-142.




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